View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14368_high_11 (Length: 355)
Name: NF14368_high_11
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14368_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 9349088 - 9349435
Alignment:
| Q |
7 |
ggtaggcgggcgctaacttgttgaagctgactattataatacttctacttctactttgtcagttcaacgaaggctccgttatctttgtagaaagtagagt |
106 |
Q |
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| T |
9349088 |
ggtaggcgggcactaacttgttgaagctaactgttataatacttctacttctactttgtcggttcaaagaaggctccgttatctttgtagaaagtagagt |
9349187 |
T |
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| Q |
107 |
tcacaaatgtctgttcaaagaagcaagtggaatcacctactcaataatcaaacttgaaagacatgtgtgaagtgaagttcttcatcacattattatcaag |
206 |
Q |
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| T |
9349188 |
ttacaaatgtctgttcaaagaagctagtggaatcacctactcaataatcaaacttgatagacatgtgtgaagtgaagttcttcatcacattattattaag |
9349287 |
T |
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| Q |
207 |
tgt-ctcttgcgaaaaattggttcaacagacaatataaacaaaagttgttgagtgtaatagatttcaccata-ttttatttgaagtcattggttttatcg |
304 |
Q |
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| T |
9349288 |
tgtcctcttgcgaaaaattggttcaacagacaatataaacaaaagttgttgagtgtaatagatttcaccatatttttatttgaagtcattggttttatcg |
9349387 |
T |
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| Q |
305 |
tttacagttaatagtagttattgatctatcttgatcaaaatattcttc |
352 |
Q |
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| T |
9349388 |
tttacagttaatagtagttattgagctatcttgatcaaaatattcttc |
9349435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 47 - 352
Target Start/End: Original strand, 9318792 - 9319097
Alignment:
| Q |
47 |
acttctacttctactttgtcagttcaacgaaggctccgttatctttgtagaaagtagagttcacaaatgtctgttcaaagaagcaagtggaatcacctac |
146 |
Q |
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| T |
9318792 |
acttctacttctactttgtcagttcaaagaaggctccgttatctttgtagaaagtagagttcacaaatgtctgttcaaagaagctagtggaatcacctac |
9318891 |
T |
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| Q |
147 |
tcaataatcaaacttgaaagacatgtgtgaagtgaagttcttcatcacattattatcaagtgtctcttgcgaaaaattggttcaacagacaatataaaca |
246 |
Q |
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| T |
9318892 |
tcaataatcaaacttgatagacatgtgtgaagtgaagttcttcatcacattattattaagtgtctcttgcgaaaaattggttcaacagacaatataaaca |
9318991 |
T |
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| Q |
247 |
aaagttgttgagtgtaatagatttcaccatattttatttgaagtcattggttttatcgtttacagttaatagtagttattgatctatcttgatcaaaata |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9318992 |
aaagttgttgagtgtaatagatttcaccatattttatttgaagtcattggttttctcgtttacagttaatagtagttattgagctatcttgatcaaaata |
9319091 |
T |
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| Q |
347 |
ttcttc |
352 |
Q |
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|||||| |
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| T |
9319092 |
ttcttc |
9319097 |
T |
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