View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14368_high_19 (Length: 226)
Name: NF14368_high_19
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14368_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 4400376 - 4400325
Alignment:
| Q |
159 |
gtaacatgtaatctaagaacacgtgttcacatttctctgatcctttcgtaat |
210 |
Q |
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| T |
4400376 |
gtaacatgtaatctaacaacacgtgttcaaatttctctgatcctttcgtaat |
4400325 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 4400530 - 4400468
Alignment:
| Q |
5 |
tcgaagaatattaaaattaacttgcaggttcattatcagtcctaaacacatgttaaagaggtg |
67 |
Q |
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| T |
4400530 |
tcgaagtacattcaaattaacttgcaggttcattatcagtcataaacacaagttaaagaggtg |
4400468 |
T |
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