View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14368_high_2 (Length: 682)

Name: NF14368_high_2
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14368_high_2
NF14368_high_2
[»] chr3 (14 HSPs)
chr3 (10-524)||(34527457-34527969)
chr3 (428-527)||(27633606-27633705)
chr3 (428-527)||(34518427-34518526)
chr3 (325-389)||(27633799-27633863)
chr3 (325-389)||(34518617-34518681)
chr3 (451-527)||(27618067-27618143)
chr3 (583-659)||(34527314-34527398)
chr3 (48-125)||(27627524-27627601)
chr3 (48-125)||(34513313-34513390)
chr3 (451-527)||(34506863-34506939)
chr3 (612-659)||(27633516-27633563)
chr3 (180-229)||(27633921-27633970)
chr3 (612-659)||(34518298-34518344)
chr3 (10-59)||(27634001-27634053)
[»] chr6 (4 HSPs)
chr6 (36-125)||(24486465-24486555)
chr6 (11-125)||(24468169-24468286)
chr6 (36-125)||(24485746-24485835)
chr6 (10-125)||(24472475-24472595)
[»] chr2 (4 HSPs)
chr2 (11-125)||(10527955-10528072)
chr2 (11-113)||(10534867-10534972)
chr2 (337-404)||(10534541-10534609)
chr2 (335-404)||(10527634-10527704)
[»] scaffold1215 (2 HSPs)
scaffold1215 (11-113)||(2055-2160)
scaffold1215 (337-404)||(1729-1797)
[»] chr1 (1 HSPs)
chr1 (76-121)||(21991125-21991170)


Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Complemental strand, 34527969 - 34527457
Alignment:
Q  10 gcacagaggaaaacaacttgagttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaact 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34527969 gcacagaggaaaacaacttgagttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcacttcaatgaatcttgaact 34527870  T
Q  110 ttctaatatcaatgaagaagacatgaggattctaagaagggtcagaattacaagtccaccaaatatttgtatgacgaatgaggttgacgatcacagtatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34527869 ttctaatatcaatgaagaagacatgaggattctaagaagggtcagaattacaagtccaccaaatatttgtatgacgaatgaggttgatgatcacagtatt 34527770  T
Q  210 tctggagatgagaaaggttgnnnnnnnnnnaatttgattttaataatctttctttatgtgtgtgaacctgttctttctctatgttggtaccttagaaatg 309  Q
    ||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34527769 tctggagatgagaaaggttgtttttttt--aatttgattttaataatctttctttatgtgtgtgaacctgttctttctgtatgttggtaccttagaaatg 34527672  T
Q  310 aagttaggttctccctgatatatcaattttattcttcttggatgtattttattgaatagattgattatatgtcaagtctttaacttagctcaggaaaatt 409  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  34527671 aagttaggttctctctgatatatcaattttattcttcttggatgtattttattgaagagattgattatatgtcaagtcttaaacttagctcaggaaaatt 34527572  T
Q  410 ttgttcttaatttggattaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcct 509  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34527571 ttgttcttaatttggatgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcct 34527472  T
Q  510 ttacaaatgtttgct 524  Q
    |||||||||||||||    
T  34527471 ttacaaatgtttgct 34527457  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 428 - 527
Target Start/End: Complemental strand, 27633705 - 27633606
Alignment:
Q  428 aggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctgaa 527  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27633705 aggttaaaaattaaaccttttcattgttatggagtttttaaaactcaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaa 27633606  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 428 - 527
Target Start/End: Complemental strand, 34518526 - 34518427
Alignment:
Q  428 aggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctgaa 527  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  34518526 aggttaaaaattaaaccttttcgttgttatggagtttttaaaactgaatgggattattatgaaaaccttcaaaccaaatcctttacaaatgtttgctgaa 34518427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 27633863 - 27633799
Alignment:
Q  325 tgatatatcaattttattcttcttggatgtattttattgaatagattgattatatgtcaagtctt 389  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27633863 tgatatatcaattttgttcttcttggatgtattttatagaatagattgattatatgtcaagtctt 27633799  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 34518681 - 34518617
Alignment:
Q  325 tgatatatcaattttattcttcttggatgtattttattgaatagattgattatatgtcaagtctt 389  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34518681 tgatatatcaattttgttcttcttggatgtattttatagaatagattgattatatgtcaagtctt 34518617  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 451 - 527
Target Start/End: Complemental strand, 27618143 - 27618067
Alignment:
Q  451 ttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctgaa 527  Q
    |||||||||||||||| ||||||| || ||||||||||||| ||| |||||||||| |||| ||||| |||||||||    
T  27618143 ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaattcttttcaaatctttgctgaa 27618067  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 583 - 659
Target Start/End: Complemental strand, 34527398 - 34527314
Alignment:
Q  583 atgtaacctcacattctttttagcatcg--------ttttctttcttgttgacattttgtgatcttgtgcatatgtatcagtgta 659  Q
    |||||||||||||||||||||||||| |         ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34527398 atgtaacctcacattctttttagcattgatttctttctttctttcttgttgatattttgtgatcttgtgcatatgtatcagtgta 34527314  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 27627601 - 27627524
Alignment:
Q  48 cctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 125  Q
    ||||||| ||||||  |||||||||| | |||||| ||||| |||||||||||||||||||| ||| || ||||||||    
T  27627601 cctactgtggtgccacaagattcttcagattttgaaaatttggcttcaatgaatcttgaactatctgatttcaatgaa 27627524  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 34513390 - 34513313
Alignment:
Q  48 cctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 125  Q
    ||||||| ||||||  |||||||||| | |||||| ||||| |||||||||||||||||||| ||| || ||||||||    
T  34513390 cctactgtggtgccacaagattcttcagattttgaaaatttggcttcaatgaatcttgaactatctgatttcaatgaa 34513313  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 527
Target Start/End: Complemental strand, 34506939 - 34506863
Alignment:
Q  451 ttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctgaa 527  Q
    |||||||||||||||| ||||||| || ||||||||||||| ||| |||||||||  |||| ||||| |||| ||||    
T  34506939 ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaactcttttcaaatctttgttgaa 34506863  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 612 - 659
Target Start/End: Complemental strand, 27633563 - 27633516
Alignment:
Q  612 tttctttcttgttgacattttgtgatcttgtgcatatgtatcagtgta 659  Q
    ||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  27633563 tttctttcttgttggtattttttgatcttgtgcatatgtatcagtgta 27633516  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 27633970 - 27633921
Alignment:
Q  180 atgacgaatgaggttgacgatcacagtatttctggagatgagaaaggttg 229  Q
    |||| ||||||||||||||||||||||||||| |  ||||||||||||||    
T  27633970 atgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttg 27633921  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 659
Target Start/End: Complemental strand, 34518344 - 34518298
Alignment:
Q  612 tttctttcttgttgacattttgtgatcttgtgcatatgtatcagtgta 659  Q
    ||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  34518344 tttctttcttgttggtatttt-tgatcttgtgcatatgtatcagtgta 34518298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 27634053 - 27634001
Alignment:
Q  10 gcacagaggaaaacaactt--gag-ttcatcttcaacaacacctactgaggtg 59  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||||||||||    
T  27634053 gcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtg 27634001  T

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Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 24486465 - 24486555
Alignment:
Q  36 tcttcaacaacacctactgaggtgcctgaagattcttctgtttttg-acaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 125  Q
    ||||||||||||||||||||| ||||  ||| |||||||||||||| |||||||  |||||||||| |||||||||||| |||||||||||    
T  24486465 tcttcaacaacacctactgagatgccacaaggttcttctgtttttgtacaatttttcttcaatgaagcttgaactttctgatatcaatgaa 24486555  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 24468169 - 24468286
Alignment:
Q  11 cacagaggaaaacaacttgag---ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaa 107  Q
    ||||||||||||||||  |||   |||||||| |||||||| ||||||| |||   ||| |||||| |||||| ||||||| || |||||||| ||||||    
T  24468169 cacagaggaaaacaacgagagcgcttcatcttaaacaacacttactgagatgcaacaaggttcttccgttttttacaattttgcgtcaatgaagcttgaa 24468268  T
Q  108 ctttctaatatcaatgaa 125  Q
    |||| | |||||||||||    
T  24468269 ctttatgatatcaatgaa 24468286  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 24485746 - 24485835
Alignment:
Q  36 tcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 125  Q
    |||||||||||||||||| || ||||  |||  | ||| |||||| ||| ||| ||||||||||| |||||||||||| |||||||||||    
T  24485746 tcttcaacaacacctactaagatgccacaaggcttttccgttttttacagttttgcttcaatgaagcttgaactttctgatatcaatgaa 24485835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 24472475 - 24472595
Alignment:
Q  10 gcacagaggaaaacaacttgag---ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtt--tttgacaatttcgcttcaatgaatctt 104  Q
    ||||||||||||||||| ||||   ||  ||||||||||||||||||||| ||||  ||| || ||| |||  ||| ||  |||  |||||||||| |||    
T  24472475 gcacagaggaaaacaacgtgagcgctttgtcttcaacaacacctactgagatgccccaaggtttttccgttctttttacggtttttcttcaatgaagctt 24472574  T
Q  105 gaactttctaatatcaatgaa 125  Q
    |||||||||||||||||||||    
T  24472575 gaactttctaatatcaatgaa 24472595  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 10528072 - 10527955
Alignment:
Q  11 cacagaggaaaacaacttgag---ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaa 107  Q
    |||||||||||||||| || |   ||||||| || |||||||||||||||||||  ||| ||||||||||||||||||||| | ||| ||||| ||| ||    
T  10528072 cacagaggaaaacaacatgcgcacttcatctccagcaacacctactgaggtgccccaaggttcttctgtttttgacaattttgattcgatgaagcttaaa 10527973  T
Q  108 ctttctaatatcaatgaa 125  Q
    |||||| ||||| |||||    
T  10527972 ctttctgatatctatgaa 10527955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 10534972 - 10534867
Alignment:
Q  11 cacagaggaaaacaacttgag---ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaa 107  Q
    |||||||||||||||| ||||   ||||||| || ||||||||||||||||| |  ||| ||||||||||||| ||||||| | ||| ||||| ||| ||    
T  10534972 cacagaggaaaacaacatgagctcttcatctccaccaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaa 10534873  T
Q  108 ctttct 113  Q
    ||||||    
T  10534872 ctttct 10534867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 10534609 - 10534541
Alignment:
Q  337 tttattcttcttggatgtattttattgaatagatt-gattatatgtcaagtctttaacttagctcagga 404  Q
    |||||| | ||||||||||||||  | |||||||| ||| ||||||||||||||||| |||||||||||    
T  10534609 tttattgtgcttggatgtattttgctaaatagatttgatcatatgtcaagtctttaatttagctcagga 10534541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 404
Target Start/End: Complemental strand, 10527704 - 10527634
Alignment:
Q  335 attttattcttcttggatgtattttattgaatagatt-gattatatgtcaagtctttaacttagctcagga 404  Q
    |||||||| | |||| |||||||||  |||||||||| ||| ||| ||||||||||||| |||||||||||    
T  10527704 attttattgtgcttgtatgtattttgctgaatagatttgatcatacgtcaagtctttaatttagctcagga 10527634  T

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Target: scaffold1215 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 2160 - 2055
Alignment:
Q  11 cacagaggaaaacaacttgag---ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaa 107  Q
    |||||||||||||||| ||||   ||||||| || ||||||||||||||||| |  ||| ||||||||||||| ||||||| | ||| ||||| ||| ||    
T  2160 cacagaggaaaacaacatgagctcttcatctccaccaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaa 2061  T
Q  108 ctttct 113  Q
    ||||||    
T  2060 ctttct 2055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 1797 - 1729
Alignment:
Q  337 tttattcttcttggatgtattttattgaatagatt-gattatatgtcaagtctttaacttagctcagga 404  Q
    |||||| | ||||||||||||||  | |||||||| ||| ||||||||||||||||| |||||||||||    
T  1797 tttattgtgcttggatgtattttgctaaatagatttgatcatatgtcaagtctttaatttagctcagga 1729  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 21991170 - 21991125
Alignment:
Q  76 tttttgacaatttcgcttcaatgaatcttgaactttctaatatcaa 121  Q
    ||||||||||| |  |||||||||||||||| ||||||||||||||    
T  21991170 tttttgacaatctgtcttcaatgaatcttgagctttctaatatcaa 21991125  T

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