View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14368_high_6 (Length: 453)
Name: NF14368_high_6
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14368_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 23830200 - 23829767
Alignment:
| Q |
1 |
agtatatttttctcagacacttcgccactctgttgtgctcgtcagcttagtcgtgttttgactgttgatgctataggcgttgctcatccgcaaatgcagt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23830200 |
agtatatttttctcagacacttcaccactctgttgtgctcgtcagcttagtcgtgttttgactgttgatgctataggcgttgctcatccgcgaatgcagt |
23830101 |
T |
|
| Q |
101 |
ttgcttttctttgttgtccttgtttattttgttttcattctcatgnnnnnnngttagcaactaaaagataaagcttgacagttatggtaagggttccaac |
200 |
Q |
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| T |
23830100 |
ttgcttttctttgttgttcttgtttattttgttttcattctcatgaaaaaaagttagcaactaaaagataaagcttgacagttatggtaagggttccaac |
23830001 |
T |
|
| Q |
201 |
attaggaaacaatgtatcaaaattaactataataattgagctaacaagataaacatgcaaaagcactagcaatgctagttatttgtgctgttaaaacacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23830000 |
attaggaaacaatgtatcaaaattaactataataattgagttaacaagataaacatgcaaaagcactagcaatgctagttatttgtgctgttaaaacacc |
23829901 |
T |
|
| Q |
301 |
aaaaaatccaattattctttgacatatgcactatcaacaagcagaatgtccaagaaaaatttagttctcatacattaactacagtaagatatctacaatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23829900 |
aaaaaatccaattattctttgacatatgcactatcaacaagcagaatgtccaagaaaaatttagttctcatacattaactatagtaagatatctacaatt |
23829801 |
T |
|
| Q |
401 |
tattaagtaacacaaatgtttacgacgtggaatc |
434 |
Q |
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| T |
23829800 |
tattaagtaacacaaatgtttacgacgtggaatc |
23829767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 412
Target Start/End: Complemental strand, 23820808 - 23820626
Alignment:
| Q |
237 |
tgagctaacaagataaacatgcaaaagcactagcaatgctagttatttgtgctgtta--------aaacaccaaaaaat-ccaattattctttgacatat |
327 |
Q |
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||||||| |||||||||||| |||||||||||||||||| |||||||| ||||||| ||| |||||||||| |||| ||||| | ||| || |
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| T |
23820808 |
tgagctagcaagataaacatacaaaagcactagcaatgc-agttattta-gctgttacaatttacaaataccaaaaaattccaactattcatagacttag |
23820711 |
T |
|
| Q |
328 |
gcactatcaacaagcagaatgtccaagaaaaatttagttctcatacattaactacagtaagatatctacaatttattaagtaaca |
412 |
Q |
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||||| ||| ||| |||||| ||||||| || ||||||||||| |||||| ||| |||||||||| |||||| |||| ||||||| |
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| T |
23820710 |
gcactctcatcaaacagaatttccaagagaagtttagttctcaaacattagctatagtaagatatgtacaatctattgagtaaca |
23820626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23821034 - 23820974
Alignment:
| Q |
1 |
agtatatttttctcagacacttcgccactctgttgtgctcgtcagcttagtcgtgttttga |
61 |
Q |
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|||||| |||||||| || ||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
23821034 |
agtatacttttctcacactcttcgccactccattgtgctcctcagcttagtcatgttttga |
23820974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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