View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14368_low_1 (Length: 772)

Name: NF14368_low_1
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14368_low_1
NF14368_low_1
[»] chr1 (4 HSPs)
chr1 (52-574)||(1803689-1804219)
chr1 (1-244)||(18005798-18006054)
chr1 (218-321)||(18006084-18006192)
chr1 (597-662)||(1804237-1804302)
[»] chr7 (7 HSPs)
chr7 (1-332)||(35406624-35406958)
chr7 (59-223)||(47262197-47262361)
chr7 (483-574)||(45436853-45436944)
chr7 (474-574)||(35407000-35407100)
chr7 (336-657)||(47262543-47262866)
chr7 (597-651)||(35407117-35407171)
chr7 (256-290)||(47262460-47262494)
[»] chr2 (2 HSPs)
chr2 (1-287)||(38987379-38987671)
chr2 (597-661)||(16492417-16492481)
[»] chr6 (4 HSPs)
chr6 (218-574)||(34526674-34527043)
chr6 (79-244)||(34526479-34526644)
chr6 (661-762)||(8814500-8814601)
chr6 (597-657)||(34527061-34527121)
[»] chr3 (7 HSPs)
chr3 (52-234)||(17331329-17331511)
chr3 (333-574)||(17331719-17331966)
chr3 (597-657)||(17332082-17332142)
chr3 (218-260)||(17331582-17331624)
chr3 (597-657)||(38572923-38572983)
chr3 (255-290)||(17331632-17331667)
chr3 (532-574)||(17332022-17332064)
[»] chr5 (12 HSPs)
chr5 (52-223)||(15927861-15928032)
chr5 (59-223)||(9717796-9717960)
chr5 (475-574)||(41284363-41284462)
chr5 (340-662)||(15927347-15927669)
chr5 (597-657)||(9717282-9717342)
chr5 (336-574)||(9717360-9717614)
chr5 (307-375)||(41281784-41281851)
chr5 (597-657)||(3514451-3514511)
chr5 (218-260)||(15927765-15927807)
chr5 (597-657)||(41284479-41284539)
chr5 (255-290)||(15927722-15927757)
chr5 (256-290)||(9717663-9717697)
[»] chr8 (3 HSPs)
chr8 (597-657)||(14123351-14123411)
chr8 (597-662)||(10582094-10582159)
chr8 (597-650)||(37233494-37233547)
[»] chr4 (1 HSPs)
chr4 (597-657)||(1121459-1121519)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 52 - 574
Target Start/End: Original strand, 1803689 - 1804219
Alignment:
Q  52 ttcaaatctctgctctttagtgtttttcaattccaatttccaaacaaagataaaagtaaacataatacgtaataacattcaaattccatgaatttaacaa 151  Q
    ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1803689 ttcaactctctgctcattagtgttttccaattccaatttacaaacaaagataaaagtaaacataatacctaataacattcaaattccatgaatttaacaa 1803788  T
Q  152 agaaaattcaatnnnnnnnnnnnngggttttagtttttacctttctggtggcaatggaaaggaggagagaagtggcggtggcgattgggtggcggag--- 248  Q
    ||||||||||||            |||||||||||||||||||| |||||||  ||||||| ||||||||||  ||||   ||||||||||||||||       
T  1803789 agaaaattcaataaaaaataaaaagggttttagtttttacctttttggtggcggtggaaagaaggagagaagcagcgg---cgattgggtggcggagaag 1803885  T
Q  249 --gcaggtctgaggatatgggtgggtgtggtggtttctgagtttctaacttctaattctagttgtgacagataattcatagattaaataaagggttttct 346  Q
      || |   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1803886 cggcggcggtgaggatatgggtgggtgtggtggtttatgagtttctaacttctaattctagttgtgacagataattcatagattaaataaagggttttca 1803985  T
Q  347 tttttaattaaacaaaaggaattagtttgagcnnnnnnngtgatcacaagtaaaatatattgggccccacgaacaagaagcaacgtaaagg--aaaaaat 444  Q
    ||||||||||||||||||||||||||||||||        |||| | || ||||||||||||||||||||||| |||||| |  |||||||  |||||||    
T  1803986 tttttaattaaacaaaaggaattagtttgagcaaaaaaa-tgattaaaattaaaatatattgggccccacgaaaaagaagaactgtaaaggaaaaaaaat 1804084  T
Q  445 ataaacaaaaca-----caggagttgaacctctaaccatgcaatcttgtacgtaacgctctaccactgaagtattcttaacagtttgacaagttcttgct 539  Q
    ||||  ||||||     |||||||||||||  |  ||||||| ||||| || |||||||| |||||||||||||| ||||||||||| ||| || | |||    
T  1804085 ataagaaaaacaccaagcaggagttgaacccttggccatgcagtcttgcacataacgctcaaccactgaagtattgttaacagtttgtcaaattttcgct 1804184  T
Q  540 ttcacctctatataacacttactataggaccttac 574  Q
    ||||||||||||||| |||||| ||||||||||||    
T  1804185 ttcacctctatataatacttacaataggaccttac 1804219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 18005798 - 18006054
Alignment:
Q  1 tgttggctttgataacccatgttaaaagtatac------ccaataggatgaa-----attggttcaaatctctgctctttagtgtttttcaattccaatt 89  Q
    ||||||||||||||||||||||| |||||||||      |||||||| ||||     ||||||||||||||||||||||||||||||| |||||||||||    
T  18005798 tgttggctttgataacccatgttcaaagtatactcttttccaataggttgaattgaaattggttcaaatctctgctctttagtgttttccaattccaatt 18005897  T
Q  90 tccaaacaaagataaaagtaaacataatacgtaataacattcaaattccatgaatttaacaaagaaaattcaat--nnnnnnnnnnnngggttttagttt 187  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||              ||||||||||||    
T  18005898 tacaaacaaagataaaagtaaacataatacctaataacattcaaattccatgaatttaacaaagaaaattcaataaaaaaaataaaaagggttttagttt 18005997  T
Q  188 ttacctttctggtggcaatggaaaggaggagagaagtggcggtggcgattgggtggc 244  Q
    |||||||| |||||||  ||||||| ||||||||||  |||| ||||||||||||||    
T  18005998 ttacctttttggtggcggtggaaagaaggagagaagcagcggcggcgattgggtggc 18006054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 218 - 321
Target Start/End: Original strand, 18006084 - 18006192
Alignment:
Q  218 gagaagtggcggtggcgattgggtggcggaggcaggtctgagg-----atatgggtgggtgtggtggtttctgagtttctaacttctaattctagttgtg 312  Q
    |||||| ||||||||||||||||||||||||||||||||||||     ||||| |||||||||||||||| ||||||||||||||| |||||||||||||    
T  18006084 gagaagcggcggtggcgattgggtggcggaggcaggtctgaggtgaggatatgagtgggtgtggtggtttatgagtttctaacttcaaattctagttgtg 18006183  T
Q  313 acagataat 321  Q
    |||||||||    
T  18006184 acagataat 18006192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 662
Target Start/End: Original strand, 1804237 - 1804302
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggccttggt 662  Q
    |||||||||||||||||||||| |||||||||||| |  ||| | ||||||||||| |||| ||||    
T  1804237 gggcccccaaaaatttgaggcccagtgtcgtcgcctagtcccaacgggctatgggccggccctggt 1804302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 35406624 - 35406958
Alignment:
Q  1 tgttggctttgataacccatgttaaaagtataccc------aataggatgaaattggttcaaatctctgctctttagtgtttttcaattccaatttccaa 94  Q
    ||||||||||||||||||||||| ||||| ||| |      |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  35406624 tgttggctttgataacccatgttcaaagtgtactctttttcaataggttgaaattggttcaaatctatgctctttagtgtttttcaatttcaatttccaa 35406723  T
Q  95 acaaagataaaagtaaacataatacgtaataacattcaaattccatgaatttaacaaagaaaattcaatnnnnnnnnnnnngggttttagtttttacctt 194  Q
    ||||||||    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||            |||||||||||||||||||    
T  35406724 acaaagatg---gtaaacataatacgaaataacattcaaatttcatgaatttaacaaagaaaattcaataaaaaataaaaagggttttagtttttacctt 35406820  T
Q  195 tctggtggcaatggaaaggaggagagaagtggcggtggcgattgggtggcggaggcaggtctgaggatatgggtgggtgtggtggtttctgagtttctaa 294  Q
    |||||||||  ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35406821 tctggtggcggtggaaagaaggagagaagtggcggtggcgattggatggcggaggtaggtctgaggatatgggtgggtgtggtggtttctgagtttctaa 35406920  T
Q  295 cttctaattctagttgtgacagataattcatagattaa 332  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35406921 cttctaattctagttgtgacagataattcatagattaa 35406958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 47262197 - 47262361
Alignment:
Q  59 ctctgctctttagtgtttttcaattccaatttccaaacaaagataaaagtaaacataatacgtaataacattcaaattccatgaatttaacaaagaaaat 158  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47262197 ctctgctcattagtgttttccaattccaatttccaaacaaagataaaagtaaacataatacctaataacattcaaattccatgaatttaacaaagaaaat 47262296  T
Q  159 tcaatnnnnnnnnnnnngggttttagtttttacctttctggtggcaatggaaaggaggagagaag 223  Q
    |||||            |||||||||||||||||||| |||||||  ||||||| ||||||||||    
T  47262297 tcaataaaaaataaaaagggttttagtttttacctttttggtggcggtggaaagaaggagagaag 47262361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 483 - 574
Target Start/End: Complemental strand, 45436944 - 45436853
Alignment:
Q  483 tcttgtacgtaacgctctaccactgaagtattcttaacagtttgacaagttcttgctttcacctctatataacacttactataggaccttac 574  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||||||  |||||||||||||||||||||||||||||||||||||    
T  45436944 tcttgtacgtaacgctctaccaccgaagtattcttaacaatttgtcaagttctctctttcacctctatataacacttactataggaccttac 45436853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 474 - 574
Target Start/End: Original strand, 35407000 - 35407100
Alignment:
Q  474 accatgcaatcttgtacgtaacgctctaccactgaagtattcttaacagtttgacaagttcttgctttcacctctatataacacttactataggacctta 573  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| | |  |||||||| | |||||||||||||||||||||||||||||||||||    
T  35407000 accatgcagtcttatacgtaacgctctaccactgaagtattcttaacaatctatcaagttctcgttttcacctctatataacacttactataggacctta 35407099  T
Q  574 c 574  Q
    |    
T  35407100 c 35407100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 336 - 657
Target Start/End: Original strand, 47262543 - 47262866
Alignment:
Q  336 aagggttttcttttttaattaaacaaaaggaattagtttgagcnnnnnnngtgatcacaagtaaaatatattgggccccacgaacaagaagcaacgtaaa 435  Q
    |||||||||| ||||||||||||||||||||||||||||||||        |||| | || |||||||||||||||||||||   |||||| |  |||||    
T  47262543 aagggttttcatttttaattaaacaaaaggaattagtttgagcaaaaaaaatgattaaaattaaaatatattgggccccacggtaaagaagaactgtaaa 47262642  T
Q  436 ggaaaaaatat--aaacaaaacac-----aggagttgaacctctaaccatgcaatcttgtacgtaacgctctaccactgaagtattcttaacagtttgac 528  Q
    |||||||| ||  ||  ||||| |     ||||||||||||  |  ||| ||  ||||| || |||||||| |||||||||||| | ||||||| ||| |    
T  47262643 ggaaaaaaaatgtaagaaaaacgcccagcaggagttgaacccttggccaagcggtcttgcacataacgctcaaccactgaagtagtgttaacagcttgtc 47262742  T
Q  529 aagttcttgctttcacctctatataacacttactataggaccttacnnnnnnnnnnnnnnnnnnnnnngggcccccaaaaatttgaggcctagtgtcgtc 628  Q
    || |||| ||||||| |||||||||| |||||| ||||||||||||                      |||||||||||||||||||||| |||||||||    
T  47262743 aaattctcgctttcagctctatataatacttacaataggaccttacatataaaaaaaatatat-----gggcccccaaaaatttgaggcccagtgtcgtc 47262837  T
Q  629 gcccatccccgatgggctatgggctggcc 657  Q
    ||||| |||||| ||||||||||| ||||    
T  47262838 gcccagccccgacgggctatgggccggcc 47262866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 651
Target Start/End: Original strand, 35407117 - 35407171
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatggg 651  Q
    |||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  35407117 gggccctcaaaaatttgaggcccagtgtcgtcgcccagccccgacgggctatggg 35407171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 47262460 - 47262494
Alignment:
Q  256 tgaggatatgggtgggtgtggtggtttctgagttt 290  Q
    ||||||||||||||||||||||||||| |||||||    
T  47262460 tgaggatatgggtgggtgtggtggtttatgagttt 47262494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 38987671 - 38987379
Alignment:
Q  1 tgttggctttgataacccatgttaaaagtatac------ccaataggatgaaattggttcaaatctctgctctttagtgtttttcaattccaatttccaa 94  Q
    ||||||||||||||||||||||| ||||| |||      |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  38987671 tgttggctttgataacccatgttcaaagtctactcttttccaataggttgaaattggttcaaatctctgctctctagtgttttccaattccaatttccaa 38987572  T
Q  95 acaaagataaaagtaaacataatacgtaataacattcaaattccatgaatttaacaaagaaaattcaatnnnnnnnnnnnngggttttagtttttacctt 194  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||            |||||||||||||||||||    
T  38987571 acaaagataaaagtaaacataatacgtaataacattcaaatttcatgaatttaacaaaaaaaattcaataaaaaataaaaagggttttagtttttacctt 38987472  T
Q  195 tctggtggcaatggaaaggaggagagaagtggcggtggcgattgggtggcggaggcaggtctgaggatatgggtgggtgtggtggtttctgag 287  Q
    |||||||||  ||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  38987471 tctggtggcggtggaaagaaggagagaagcggcggcggcgattgggtggcggaggcaggtctgaggatatgggtgggcgtgatggtttctgag 38987379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 661
Target Start/End: Complemental strand, 16492481 - 16492417
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggccttgg 661  Q
    ||||||| ||||||| ||||||  ||||||||||||| || ||| ||||||||||| ||||||||    
T  16492481 gggccccaaaaaattggaggcccggtgtcgtcgcccagcctcgacgggctatgggccggccttgg 16492417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 1e-74; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 218 - 574
Target Start/End: Original strand, 34526674 - 34527043
Alignment:
Q  218 gagaagtggcggtggcgattgggtggcggaggcaggtctg-----aggatatgggtgggtgtggtggtttctgagtttctaacttctaattctagttgtg 312  Q
    |||||| ||||| |||||||||||||||||||||||||||     ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  34526674 gagaagcggcggcggcgattgggtggcggaggcaggtctgtggtgaggatatgggtgggtgtggtggtttatgactttctaacttctaattctagttgtg 34526773  T
Q  313 acagataattcatagattaaataaagggttttcttttttaattaaacaaaaggaattagtttgagcnnnnnnngtgatcacaagtaaaatatattgggcc 412  Q
     |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||         |||| | || ||||||||||||||||    
T  34526774 ccagaaaatttatagattaaataaagggttttcatttttaattaaacaaaaggaattagtttgag--aaaaaaatgattaaaattaaaatatattgggcc 34526871  T
Q  413 ccacgaacaagaagcaacgtaaaggaaaa--aatataaacaaaac--------acaggagttgaacctctaaccatgcaatcttgtacgtaacgctctac 502  Q
    ||||||| |||||| |  |||||||||||  ||| |||  |||||         |||||||||||||  |  ||||||  ||||| |  |||||||| ||    
T  34526872 ccacgaaaaagaagaactgtaaaggaaaaataatgtaagaaaaacgccgccaagcaggagttgaacccttggccatgcggtcttgcaaataacgctcaac 34526971  T
Q  503 cactgaagtattcttaacagtttgacaagttcttgctttcacctctatataacacttactataggaccttac 574  Q
    |||||||||||| ||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||||    
T  34526972 cactgaagtattgttaacagtttgtcaaattctcgctttcacctctatataatacttactataggaccttac 34527043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 34526479 - 34526644
Alignment:
Q  79 caattccaatttccaaacaaagataaaagtaaacataatacgtaataacattcaaattccatgaatttaacaaagaaaattcaatnnnnnnnnnnnnggg 178  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||            ||     
T  34526479 caattccaatttacaaacaaagataaaagtaaacataatacctaataacattcaaattccatgaatttaacaaagaaaattcaataaaaaataaaaaggt 34526578  T
Q  179 ttttagtttttacctttctggtggcaatggaaaggaggagagaagtggcggtggcgattgggtggc 244  Q
    ||||||||||||||||| |||||||  ||||||| ||||||||||  |||| | ||||||||||||    
T  34526579 ttttagtttttacctttttggtggcggtggaaagaaggagagaagcagcggcgacgattgggtggc 34526644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 661 - 762
Target Start/End: Complemental strand, 8814601 - 8814500
Alignment:
Q  661 gtgttggtgttgtatcttcttagcttctagtggtgttctattttgttgttctttatttcaattttctatttaggatgtggtactgtgatgggtctgtgct 760  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||    
T  8814601 gtgttggtgttgtatcttcttagcttctagtggtgttctggtttgttgttctttaattcaattttctgtttaggatgtggtactgtgctgggtctttgct 8814502  T
Q  761 gc 762  Q
    ||    
T  8814501 gc 8814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 597 - 657
Target Start/End: Original strand, 34527061 - 34527121
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggcc 657  Q
    |||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||    
T  34527061 gggcccccaaaaatttgaggcccagtgtcgtcgcccagccccgacgggctatgggccggcc 34527121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 3e-53; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 17331329 - 17331511
Alignment:
Q  52 ttcaaatctctgctctttagtgtttttcaattccaatttccaaacaaagataaaagtaaacataatacgtaataacattcaaattccatgaatttaacaa 151  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17331329 ttcaactctctgctcattagtgttttccaattccaatttccaaacaaagataaaagtaaacataatacctaataacattcaaattccatgaatttaacaa 17331428  T
Q  152 agaaaattcaatnnnnnnnnnnnngggttttagtttttacctttctggtggcaatggaaaggaggagagaagtggcggtggcg 234  Q
    ||||||||||||            |||||||||||||||||||| |||||||  ||||||| |||||||||| ||||| ||||    
T  17331429 agaaaattcaataaaaaataaaaagggttttagtttttacctttttggtggcggtggaaagaaggagagaagcggcggcggcg 17331511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 333 - 574
Target Start/End: Original strand, 17331719 - 17331966
Alignment:
Q  333 ataaagggttttcttttttaattaaacaaaaggaattagtttgagcnnnnnnngtgatcacaagtaaaatatattgggccccacgaacaagaagcaacgt 432  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||        |||| | || ||||||||||||||||||||| | |||||| |  ||    
T  17331719 ataaagggtttacatttttaattaaacaaaaggaattagtttgagcaaaaaaa-tgattaaaattaaaatatattgggccccacggaaaagaagaactgt 17331817  T
Q  433 aaaggaaaaaatata-aacaaaa----ca--caggagttgaacctctaaccatgcaatcttgtacgtaacgctctaccactgaagtattcttaacagttt 525  Q
    ||||||||||| ||| || ||||    ||  |||||||||||||  |  |||||| |||||| || |||| ||| |||||||||||| | ||||||||||    
T  17331818 aaaggaaaaaaaatataagaaaaatgccaagcaggagttgaacccttggccatgcgatcttgcacataacactcaaccactgaagtagtgttaacagttt 17331917  T
Q  526 gacaagttcttgctttcacctctatataacacttactataggaccttac 574  Q
    | ||| |||| |||||||||||||||||| |||||| ||||||||||||    
T  17331918 gtcaaattctcgctttcacctctatataatacttacaataggaccttac 17331966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 597 - 657
Target Start/End: Original strand, 17332082 - 17332142
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggcc 657  Q
    |||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||| ||||    
T  17332082 gggcccccaaaaatttgaggcccagtgtggtcgcccagccccgacgggctatgggccggcc 17332142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 17331582 - 17331624
Alignment:
Q  218 gagaagtggcggtggcgattgggtggcggaggcaggtctgagg 260  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  17331582 gagaagcggcggcggcgattgggtggcggaggcaggtctgagg 17331624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 657
Target Start/End: Original strand, 38572923 - 38572983
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggcc 657  Q
    ||||||| ||||||| ||||||| ||||||||||||| || ||| ||||||||||| ||||    
T  38572923 gggccccaaaaaattggaggcctggtgtcgtcgcccagcctcgacgggctatgggccggcc 38572983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 290
Target Start/End: Original strand, 17331632 - 17331667
Alignment:
Q  255 ctgaggatatgggtgggtgtggtggtttctgagttt 290  Q
    |||||||||||||||||||||||||||| |||||||    
T  17331632 ctgaggatatgggtgggtgtggtggtttatgagttt 17331667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 574
Target Start/End: Original strand, 17332022 - 17332064
Alignment:
Q  532 ttcttgctttcacctctatataacacttactataggaccttac 574  Q
    |||| |||||||||||||||||| |||||| ||||||||||||    
T  17332022 ttctcgctttcacctctatataatacttacaataggaccttac 17332064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 15928032 - 15927861
Alignment:
Q  52 ttcaaatctctgctctttagtgtttttcaattccaatttccaaacaaagataaaagtaaacataatacgtaataacattcaaattccatgaatttaacaa 151  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15928032 ttcaactctctgctcattagtgttttccaattccaatttccaaacaaagataaaagtaaacataatacctaataacattcaaattccatgaatttaacaa 15927933  T
Q  152 agaaaattcaatnnnnnnnnnnnngggttttagtttttacctttctggtggcaatggaaaggaggagagaag 223  Q
    ||||||||||||            |||||||||||||||||||| |||||||  ||||||| ||||||||||    
T  15927932 agaaaattcaataaaaaataaaaagggttttagtttttacctttttggtggcggtggaaagaaggagagaag 15927861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 9717960 - 9717796
Alignment:
Q  59 ctctgctctttagtgtttttcaattccaatttccaaacaaagataaaagtaaacataatacgtaataacattcaaattccatgaatttaacaaagaaaat 158  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9717960 ctctgctcattagtgttttccaattccaatttccaaacaaagataaaagtaaacataatacctaataacattcaaattccatgaatttaacaaagaaaat 9717861  T
Q  159 tcaatnnnnnnnnnnnngggttttagtttttacctttctggtggcaatggaaaggaggagagaag 223  Q
    |||||            |||||||||||||||||||| |||||||  ||||||| ||||||||||    
T  9717860 tcaataaaaaataaaaagggttttagtttttacctttttggtggcggtggaaagaaggagagaag 9717796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 574
Target Start/End: Original strand, 41284363 - 41284462
Alignment:
Q  475 ccatgcaatcttgtacgtaacgctctaccactgaagtattcttaacagtttgacaagttcttgctttcacctctatataacacttactataggaccttac 574  Q
    |||||||||| | ||| ||| |||||||||||||||||||||||||  ||||  || | || ||||| ||||||||||||||||||||||||||||||||    
T  41284363 ccatgcaatcatatacttaatgctctaccactgaagtattcttaaccatttgttaactgctcgcttttacctctatataacacttactataggaccttac 41284462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 340 - 662
Target Start/End: Complemental strand, 15927669 - 15927347
Alignment:
Q  340 gttttcttttttaattaaacaaaaggaattagtttgagcnnnnnnngtgatcacaagtaaaatatattgggccccacgaacaagaagcaacgtaaaggaa 439  Q
    |||||| ||||||||||| ||||||||||||||||||||        |||| | || ||||||||||||||||||||| | |||||| |  |||||||||    
T  15927669 gttttcatttttaattaa-caaaaggaattagtttgagcaaaaaaa-tgattaaaattaaaatatattgggccccacggaaaagaagaactgtaaaggaa 15927572  T
Q  440 aaaata--taaacaaaacac-----aggagttgaacctctaaccatgcaatcttgtacgtaacgctctaccactgaagtattcttaacagtttgacaagt 532  Q
    |||| |  |||  ||||| |     ||||||||||||  |  ||||||  ||||| || |||||||| |||||||||||| | ||||||  ||| ||| |    
T  15927571 aaaaaaaataagaaaaacgcccagcaggagttgaacccttggccatgcggtcttgcacataacgctcaaccactgaagtagtgttaacaacttgtcaaat 15927472  T
Q  533 tcttgctttcacctctatataacacttactataggaccttacnnnnnnnnnnnnnnnnnnnnnngggcccccaaaaatttgaggcctagtgtcgtcgccc 632  Q
    ||| |||||||||||||||||| |||||| ||||||||||||                      |||||||||||||||||||||| |||||||||||||    
T  15927471 tctcgctttcacctctatataatacttacaataggaccttacatataaaaaaaatatat-----gggcccccaaaaatttgaggcccagtgtcgtcgccc 15927377  T
Q  633 atccccgatgggctatgggctggccttggt 662  Q
    | |||||| ||||||||||| |||| ||||    
T  15927376 agccccgacgggctatgggccggccctggt 15927347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 597 - 657
Target Start/End: Complemental strand, 9717342 - 9717282
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggcc 657  Q
    |||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||    
T  9717342 gggcccccaaaaatttgaggcccagtgtcgtcgcccagccccgacgggctatgggccggcc 9717282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 574
Target Start/End: Complemental strand, 9717614 - 9717360
Alignment:
Q  336 aagggttttcttttttaattaaacaaaaggaattagtttgagcnnnnnnngtgatcacaagtaaaatatattgggccccacgaacaagaagcaacgtaaa 435  Q
    |||||||||| ||||||||||||||||||||||||||||||||        |||| | || |||||||||||||||||||||   |||||| |  |||||    
T  9717614 aagggttttcatttttaattaaacaaaaggaattagtttgagcaaaaaaaatgattaaaattaaaatatattgggccccacggtaaagaagaactgtaaa 9717515  T
Q  436 gg-aaaaaatataaacaaaac---------------acaggagttgaacctctaaccatgcaatcttgtacgtaacgctctaccactgaagtattcttaa 519  Q
    || |||||||||||  |||||                |||||||||||||  |  ||| ||  ||||| || |||||||| |||||||||||| | ||||    
T  9717514 ggaaaaaaatataagaaaaacgcccagcaacgcccagcaggagttgaacccttggccaagcggtcttgcacataacgctcaaccactgaagtagtgttaa 9717415  T
Q  520 cagtttgacaagttcttgctttcacctctatataacacttactataggaccttac 574  Q
    ||| ||| ||| |||| ||||||| |||||||||| |||||| ||||||||||||    
T  9717414 cagcttgtcaaattctcgctttcagctctatataatacttacaataggaccttac 9717360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 307 - 375
Target Start/End: Original strand, 41281784 - 41281851
Alignment:
Q  307 gttgtgacagataattcatagattaaataaagggttttcttttttaattaaacaaaaggaattagtttg 375  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || |||||    
T  41281784 gttgtgacagataattcatagattcaa-aaaggcttttcttttttaattaagcaaaaggatttggtttg 41281851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 657
Target Start/End: Original strand, 3514451 - 3514511
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggcc 657  Q
    ||||||| ||||||| ||||||  |||||||||||||||| ||||||||||||||| ||||    
T  3514451 gggccccaaaaaattggaggcccggtgtcgtcgcccatcctcgatgggctatgggccggcc 3514511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 15927807 - 15927765
Alignment:
Q  218 gagaagtggcggtggcgattgggtggcggaggcaggtctgagg 260  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  15927807 gagaagcggcggcggcgattgggtggcggaggcaggtctgagg 15927765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 657
Target Start/End: Original strand, 41284479 - 41284539
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggcc 657  Q
    ||||||||||||||||||||||   |||| ||||||| |||||| ||||||||||| ||||    
T  41284479 gggcccccaaaaatttgaggcccgatgtcatcgcccagccccgacgggctatgggccggcc 41284539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 290
Target Start/End: Complemental strand, 15927757 - 15927722
Alignment:
Q  255 ctgaggatatgggtgggtgtggtggtttctgagttt 290  Q
    |||||||||||||||||||||||||||| |||||||    
T  15927757 ctgaggatatgggtgggtgtggtggtttatgagttt 15927722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 9717697 - 9717663
Alignment:
Q  256 tgaggatatgggtgggtgtggtggtttctgagttt 290  Q
    ||||||||||||||||||||||||||| |||||||    
T  9717697 tgaggatatgggtgggtgtggtggtttatgagttt 9717663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 657
Target Start/End: Original strand, 14123351 - 14123411
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggcc 657  Q
    ||||||| ||||||| ||||||| ||||||||||||| || ||| ||||||||||| ||||    
T  14123351 gggccccaaaaaattggaggcctggtgtcgtcgcccagcctcgacgggctatgggccggcc 14123411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 662
Target Start/End: Complemental strand, 10582159 - 10582094
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggccttggt 662  Q
    ||||||| ||||||| ||||||  ||||||||||||| || ||| ||||||||||| |||| ||||    
T  10582159 gggccccaaaaaattggaggcccggtgtcgtcgcccagcctcgacgggctatgggccggccctggt 10582094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 650
Target Start/End: Complemental strand, 37233547 - 37233494
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgg 650  Q
    ||||||| ||||||| |||||| |||||||||||||| || ||| |||||||||    
T  37233547 gggccccaaaaaattggaggcccagtgtcgtcgcccagcctcgacgggctatgg 37233494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 657
Target Start/End: Original strand, 1121459 - 1121519
Alignment:
Q  597 gggcccccaaaaatttgaggcctagtgtcgtcgcccatccccgatgggctatgggctggcc 657  Q
    ||||||| ||||||| ||||||  |||||||||||||||| ||| ||||||||||| ||||    
T  1121459 gggccccaaaaaattggaggcccggtgtcgtcgcccatcctcgacgggctatgggccggcc 1121519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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