View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14368_low_10 (Length: 417)
Name: NF14368_low_10
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14368_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 10909865 - 10910267
Alignment:
| Q |
1 |
ccaacaaatgtttgagcctggccgacctgcccacttatgagtaactacgagtcatacctaacaactctgaatagtcatgcctttccacacaaatcaatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10909865 |
ccaacaaatgtttgagcctggccgacctgcccacttatgagtaactacgagtcatacctaacaactctgaatagtcatgcctttctacacaaatcaatca |
10909964 |
T |
|
| Q |
101 |
tccaaatgatgtgtaaaaaagacaaagtagtttacaaattacaaccatacttaaaattgaatgaaagaaattagtattaatccacataagataagaaaaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10909965 |
tccaaatggtgtgtaaaaaagacaaagtagtttacaaattacaaccatacttaaaattgaatgaaagaaattagtattaatccacataagataagaaaaa |
10910064 |
T |
|
| Q |
201 |
tcatgtgatcaaacctgtgacaaaataagatctttggaagtcttgtttgattgtgtccacaacagaagcacgatcaatggtttgaagaagtctctgagga |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10910065 |
tcatgtaatcaaacctgtgacaaaataagatctttggaagtcttgtttgattgtgtccacaacagaagcacgatcaatggtttgaagaagtctctgagga |
10910164 |
T |
|
| Q |
301 |
ggagaagcttcttcttcatcagatggagaacggaaagcagaagcagcaatgcctagaagctcagaactataccatgcaaccttaagaaatgcattggtct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10910165 |
ggagaagcttcttcttcatcagatggagaacggaaagcagaagcagcaatgcctagaagctcagaactataccatgcaaccttaagaaatgcattggtct |
10910264 |
T |
|
| Q |
401 |
gtg |
403 |
Q |
| |
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||| |
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| T |
10910265 |
gtg |
10910267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 13725564 - 13725163
Alignment:
| Q |
1 |
ccaacaaatgtttgagcctggccgacctgcccacttatgagtaactacgagtcatacctaacaactctgaatagtcatgcctttccacacaaatcaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
13725564 |
ccaacaaatgtttgagcctggccgacctgcccacttatcagtaactacgagtcatacctaacaactctgaatagtcatgcctctctacacaaatcaatca |
13725465 |
T |
|
| Q |
101 |
tccaaatgatgtgtaaaaaagacaaagtagtttacaaattacaaccatacttaaaattgaatgaaagaaattagtattaatccacataagataagaaaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13725464 |
tccaaatgatgtgtaaaaaagacaaagtagtttacaaattacaaccatacttaaaattgaatgaaagaaattagtattaatccacataagataagaaaaa |
13725365 |
T |
|
| Q |
201 |
tcatgtgatcaaacctgtgacaaaataagatctttggaagtcttgtttgattgtgtccacaacagaagcacgatcaatggtttgaagaagtctctgagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13725364 |
tcatgtgatcaaacctgtgacaaaataagatctttggaagtcttgtttgattgtgtccgcaacagaagcacgatcaatggtttgaagaagtctctgagga |
13725265 |
T |
|
| Q |
301 |
ggagaagcttcttcttcatcagatggagaacggaaagcagaagcagcaatgcctagaagctcagaactataccatgcaaccttaagaaatgcattggtct |
400 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13725264 |
ggagaagcttattcttcatcagatggagaacggaaagcagaagcagcaatgcctagaagctcagaactataccatgcaaccttaagaaatgcattggtct |
13725165 |
T |
|
| Q |
401 |
gt |
402 |
Q |
| |
|
|| |
|
|
| T |
13725164 |
gt |
13725163 |
T |
|
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