View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14368_low_14 (Length: 337)

Name: NF14368_low_14
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14368_low_14
NF14368_low_14
[»] chr4 (48 HSPs)
chr4 (164-225)||(32956890-32956953)
chr4 (1-51)||(7738817-7738867)
chr4 (1-49)||(45198340-45198388)
chr4 (1-49)||(3442344-3442392)
chr4 (1-49)||(4209572-4209620)
chr4 (1-49)||(4264347-4264395)
chr4 (1-49)||(5735484-5735532)
chr4 (1-53)||(6494803-6494855)
chr4 (1-49)||(18359973-18360021)
chr4 (1-49)||(28152204-28152252)
chr4 (1-49)||(36602907-36602955)
chr4 (1-49)||(47579499-47579547)
chr4 (1-55)||(5123151-5123205)
chr4 (4-49)||(5744083-5744128)
chr4 (1-49)||(3443387-3443435)
chr4 (1-49)||(20678588-20678636)
chr4 (1-49)||(25644572-25644620)
chr4 (1-49)||(26205704-26205752)
chr4 (1-49)||(39260132-39260180)
chr4 (1-49)||(46803845-46803893)
chr4 (1-49)||(55190566-55190614)
chr4 (1-51)||(23603645-23603695)
chr4 (10-52)||(50971650-50971692)
chr4 (5-46)||(19525717-19525758)
chr4 (1-50)||(19652255-19652304)
chr4 (1-42)||(49768658-49768699)
chr4 (1-49)||(1377244-1377292)
chr4 (1-49)||(3901139-3901187)
chr4 (1-49)||(6922940-6922988)
chr4 (1-49)||(28166487-28166535)
chr4 (1-49)||(46212350-46212398)
chr4 (1-52)||(39786354-39786405)
chr4 (9-51)||(37688031-37688073)
chr4 (48-112)||(32956768-32956833)
chr4 (1-42)||(42187007-42187048)
chr4 (1-49)||(19170539-19170587)
chr4 (9-49)||(21858919-21858959)
chr4 (9-49)||(21914782-21914822)
chr4 (1-49)||(40250790-40250838)
chr4 (14-53)||(3442570-3442609)
chr4 (14-49)||(3901365-3901400)
chr4 (14-49)||(4264134-4264169)
chr4 (14-49)||(5744309-5744344)
chr4 (14-49)||(10385074-10385109)
chr4 (1-44)||(19633854-19633897)
chr4 (14-49)||(46212576-46212611)
chr4 (14-49)||(46803631-46803666)
chr4 (14-49)||(47579287-47579322)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-49)||(15216-15264)
[»] chr7 (32 HSPs)
chr7 (1-49)||(31466358-31466406)
chr7 (1-51)||(23473967-23474017)
chr7 (1-54)||(36819909-36819962)
chr7 (1-50)||(47081193-47081242)
chr7 (1-49)||(4612087-4612135)
chr7 (1-49)||(10464115-10464163)
chr7 (1-49)||(19072982-19073030)
chr7 (1-49)||(34478008-34478056)
chr7 (1-49)||(37950945-37950993)
chr7 (1-49)||(48531535-48531583)
chr7 (1-51)||(42834290-42834340)
chr7 (1-49)||(35500747-35500795)
chr7 (1-49)||(36859208-36859256)
chr7 (1-49)||(37231563-37231611)
chr7 (2-50)||(47538137-47538185)
chr7 (1-49)||(47713502-47713550)
chr7 (1-50)||(24151580-24151629)
chr7 (5-50)||(36905743-36905788)
chr7 (1-49)||(28185411-28185459)
chr7 (1-49)||(32618942-32618990)
chr7 (9-52)||(42086635-42086678)
chr7 (14-52)||(36819693-36819731)
chr7 (1-46)||(21392231-21392276)
chr7 (12-49)||(36643963-36644000)
chr7 (1-49)||(2400498-2400546)
chr7 (5-49)||(31110842-31110886)
chr7 (14-49)||(2400285-2400320)
chr7 (14-49)||(28185634-28185669)
chr7 (15-49)||(19072769-19072803)
chr7 (14-48)||(31110625-31110659)
chr7 (14-52)||(31466584-31466622)
chr7 (14-54)||(34478237-34478277)
[»] chr1 (37 HSPs)
chr1 (1-49)||(25531991-25532039)
chr1 (1-49)||(30529050-30529098)
chr1 (1-49)||(3898571-3898619)
chr1 (1-49)||(16265246-16265294)
chr1 (1-49)||(16266375-16266423)
chr1 (1-49)||(26441847-26441895)
chr1 (1-49)||(43680283-43680331)
chr1 (1-49)||(45234849-45234897)
chr1 (1-49)||(48264811-48264859)
chr1 (1-49)||(50876577-50876625)
chr1 (1-51)||(39354262-39354312)
chr1 (1-49)||(1849914-1849962)
chr1 (1-49)||(4605212-4605260)
chr1 (1-49)||(29162056-29162104)
chr1 (1-49)||(32988349-32988397)
chr1 (1-49)||(38458943-38458991)
chr1 (1-49)||(42708713-42708761)
chr1 (1-49)||(52379202-52379250)
chr1 (5-52)||(50539477-50539524)
chr1 (1-47)||(48219644-48219690)
chr1 (4-49)||(49805252-49805297)
chr1 (1-49)||(24982564-24982612)
chr1 (1-49)||(37281305-37281353)
chr1 (14-52)||(48219868-48219906)
chr1 (1-49)||(23569674-23569722)
chr1 (14-49)||(25531778-25531813)
chr1 (14-49)||(30529276-30529311)
chr1 (15-54)||(41855755-41855794)
chr1 (14-49)||(48265037-48265072)
chr1 (14-49)||(50876364-50876399)
chr1 (14-53)||(52378985-52379024)
chr1 (20-49)||(28036972-28037001)
chr1 (14-51)||(50777262-50777299)
chr1 (15-55)||(38458723-38458763)
chr1 (1-49)||(41501607-41501655)
chr1 (14-54)||(41855524-41855564)
chr1 (1-49)||(50481489-50481537)
[»] chr5 (35 HSPs)
chr5 (1-52)||(39894994-39895045)
chr5 (1-49)||(970351-970399)
chr5 (1-49)||(4299833-4299881)
chr5 (1-49)||(5212922-5212970)
chr5 (1-49)||(22613709-22613757)
chr5 (1-49)||(32002014-32002062)
chr5 (1-49)||(32334638-32334686)
chr5 (1-49)||(35447997-35448045)
chr5 (1-49)||(42148520-42148568)
chr5 (1-54)||(38698176-38698229)
chr5 (1-46)||(39036623-39036668)
chr5 (1-49)||(5364637-5364685)
chr5 (1-49)||(16048298-16048346)
chr5 (1-49)||(35290499-35290547)
chr5 (1-49)||(43067434-43067482)
chr5 (1-49)||(14475230-14475278)
chr5 (1-49)||(23988790-23988838)
chr5 (5-49)||(29627485-29627529)
chr5 (1-49)||(37843575-37843623)
chr5 (1-49)||(39405977-39406025)
chr5 (1-49)||(40512680-40512728)
chr5 (1-44)||(37516358-37516401)
chr5 (1-58)||(4924829-4924886)
chr5 (14-55)||(37304371-37304412)
chr5 (14-58)||(5364411-5364455)
chr5 (1-49)||(43517060-43517108)
chr5 (14-49)||(23988579-23988614)
chr5 (14-49)||(29627268-29627303)
chr5 (14-49)||(35448223-35448258)
chr5 (14-59)||(5213148-5213193)
chr5 (8-49)||(16954840-16954881)
chr5 (1-42)||(25563713-25563754)
chr5 (14-51)||(30351872-30351909)
chr5 (1-49)||(1830868-1830916)
chr5 (1-49)||(41411157-41411205)
[»] chr2 (37 HSPs)
chr2 (1-56)||(7442884-7442939)
chr2 (1-50)||(14707534-14707583)
chr2 (1-49)||(18718452-18718500)
chr2 (1-49)||(23671589-23671637)
chr2 (1-49)||(40425249-40425297)
chr2 (1-47)||(44283281-44283327)
chr2 (4-49)||(27559791-27559836)
chr2 (1-42)||(30708941-30708982)
chr2 (1-49)||(3987232-3987280)
chr2 (1-49)||(9877083-9877131)
chr2 (1-49)||(14372290-14372338)
chr2 (1-49)||(34827125-34827173)
chr2 (1-49)||(44330597-44330645)
chr2 (1-43)||(36198957-36198999)
chr2 (4-49)||(4045233-4045278)
chr2 (1-49)||(20517631-20517679)
chr2 (1-49)||(32775903-32775951)
chr2 (1-49)||(41172757-41172805)
chr2 (1-49)||(42038736-42038784)
chr2 (15-49)||(20917729-20917763)
chr2 (1-43)||(40598342-40598384)
chr2 (1-54)||(39418015-39418068)
chr2 (3-43)||(4046064-4046104)
chr2 (1-49)||(13399105-13399153)
chr2 (1-53)||(24282956-24283008)
chr2 (1-49)||(41463517-41463565)
chr2 (1-49)||(42020203-42020251)
chr2 (14-49)||(14372077-14372112)
chr2 (14-49)||(18718239-18718274)
chr2 (14-49)||(23671376-23671411)
chr2 (14-49)||(32776126-32776161)
chr2 (14-49)||(34826912-34826947)
chr2 (15-49)||(40425476-40425510)
chr2 (14-48)||(41463743-41463777)
chr2 (17-49)||(7461671-7461703)
chr2 (14-46)||(14707760-14707792)
chr2 (1-49)||(43925074-43925122)
[»] chr6 (19 HSPs)
chr6 (1-54)||(18992116-18992169)
chr6 (1-49)||(8796262-8796310)
chr6 (1-49)||(20662059-20662107)
chr6 (1-49)||(22020489-22020537)
chr6 (1-49)||(25163377-25163425)
chr6 (1-49)||(25435624-25435672)
chr6 (9-49)||(29979024-29979064)
chr6 (1-49)||(30237380-30237428)
chr6 (1-49)||(11114778-11114826)
chr6 (5-49)||(16696016-16696060)
chr6 (1-49)||(31855031-31855079)
chr6 (14-49)||(33121542-33121577)
chr6 (1-54)||(24150954-24151007)
chr6 (5-49)||(643431-643475)
chr6 (1-49)||(7097873-7097921)
chr6 (14-49)||(643657-643692)
chr6 (14-49)||(2913123-2913158)
chr6 (15-49)||(11114565-11114599)
chr6 (1-49)||(13206953-13207001)
[»] chr8 (33 HSPs)
chr8 (1-49)||(2986538-2986586)
chr8 (1-49)||(3293101-3293149)
chr8 (1-49)||(8350880-8350928)
chr8 (1-49)||(14522592-14522640)
chr8 (1-49)||(18809489-18809537)
chr8 (1-49)||(23249065-23249113)
chr8 (1-49)||(30290137-30290185)
chr8 (1-49)||(43066339-43066387)
chr8 (1-49)||(45082025-45082073)
chr8 (9-49)||(2805476-2805516)
chr8 (1-49)||(6471058-6471106)
chr8 (1-49)||(29791155-29791203)
chr8 (1-49)||(30380743-30380791)
chr8 (1-49)||(31127805-31127853)
chr8 (4-47)||(38845823-38845866)
chr8 (1-56)||(40013864-40013919)
chr8 (14-56)||(40013644-40013686)
chr8 (1-49)||(13138132-13138180)
chr8 (1-49)||(37710112-37710160)
chr8 (1-41)||(39361338-39361378)
chr8 (1-39)||(6470624-6470662)
chr8 (1-51)||(12893741-12893791)
chr8 (1-52)||(1580765-1580813)
chr8 (1-49)||(38739870-38739918)
chr8 (14-49)||(1580991-1581026)
chr8 (14-53)||(11538915-11538954)
chr8 (14-53)||(14583717-14583756)
chr8 (14-49)||(29708787-29708822)
chr8 (14-49)||(29790942-29790977)
chr8 (14-49)||(30289924-30289959)
chr8 (14-49)||(37709899-37709934)
chr8 (14-49)||(38845200-38845235)
chr8 (14-54)||(43066122-43066162)
[»] chr3 (37 HSPs)
chr3 (1-49)||(7459820-7459868)
chr3 (1-49)||(8559005-8559053)
chr3 (1-49)||(10435332-10435380)
chr3 (1-49)||(18659265-18659313)
chr3 (1-49)||(29728098-29728146)
chr3 (1-49)||(34827466-34827514)
chr3 (1-49)||(38833876-38833924)
chr3 (1-49)||(54840128-54840176)
chr3 (1-49)||(4238494-4238542)
chr3 (1-49)||(10571144-10571192)
chr3 (1-49)||(21907209-21907257)
chr3 (1-49)||(27849149-27849197)
chr3 (1-49)||(32951136-32951184)
chr3 (1-49)||(37833113-37833161)
chr3 (1-49)||(52668486-52668534)
chr3 (1-40)||(38492264-38492303)
chr3 (1-42)||(1327525-1327566)
chr3 (1-46)||(47638268-47638313)
chr3 (1-49)||(17053077-17053125)
chr3 (1-45)||(36665231-36665275)
chr3 (1-49)||(45167512-45167560)
chr3 (1-49)||(46483761-46483809)
chr3 (1-49)||(48706846-48706894)
chr3 (1-49)||(51062603-51062651)
chr3 (1-49)||(53066583-53066631)
chr3 (1-49)||(3547420-3547468)
chr3 (1-49)||(28690710-28690758)
chr3 (1-49)||(32285176-32285224)
chr3 (14-53)||(7460046-7460085)
chr3 (14-49)||(29728324-29728359)
chr3 (1-42)||(48143976-48144017)
chr3 (16-49)||(52668713-52668746)
chr3 (14-50)||(2643067-2643103)
chr3 (14-50)||(49057855-49057891)
chr3 (1-49)||(49058069-49058117)
chr3 (1-49)||(54673991-54674039)
chr3 (14-50)||(54840354-54840390)
[»] scaffold0051 (2 HSPs)
scaffold0051 (1-54)||(41212-41265)
scaffold0051 (14-49)||(41443-41478)
[»] scaffold0092 (2 HSPs)
scaffold0092 (1-42)||(44115-44156)
scaffold0092 (14-49)||(44334-44369)
[»] scaffold0027 (1 HSPs)
scaffold0027 (9-46)||(117542-117579)
[»] scaffold0604 (1 HSPs)
scaffold0604 (1-49)||(1321-1369)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-41)||(12965-13005)
[»] scaffold0366 (2 HSPs)
scaffold0366 (1-41)||(10606-10646)
scaffold0366 (1-41)||(14272-14312)
[»] scaffold0340 (1 HSPs)
scaffold0340 (1-49)||(14551-14599)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 32956890 - 32956953
Alignment:
Q  164 gtgttttgataatggccttatgacctttgcaag--acatacgtaatttatcgaactgatggaat 225  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  32956890 gtgttttgataatggccttatgacctttgcaagacacatacgtaatttatcgaactgatggaat 32956953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7738867 - 7738817
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagt 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7738867 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagt 7738817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45198388 - 45198340
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45198388 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 45198340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3442392 - 3442344
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3442392 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 3442344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4209572 - 4209620
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4209572 aataatgtatattgtcaactaggtcatctattaagggacggagggagta 4209620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4264347 - 4264395
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4264347 aataatgtatattgtcaactaagtcatttattaagggacggagggagta 4264395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5735484 - 5735532
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5735484 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 5735532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6494803 - 6494855
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtat 53  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  6494803 aataatgtatattgtcaactgggtcatttattaagggacggaaggagtagtat 6494855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18360021 - 18359973
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18360021 aataatgtatattgtcaactaggtcatctattaagggacggagggagta 18359973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28152204 - 28152252
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28152204 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 28152252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36602907 - 36602955
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36602907 aataatgtatattgtcaactaggtcatctattaagggacggagggagta 36602955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47579499 - 47579547
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47579499 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 47579547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5123205 - 5123151
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtatat 55  Q
    ||||||||||||||||||||||||||| |||||||||||||||| || |||||||    
T  5123205 aataatgtatattgtcaactaggtcatctattaagggacggaggaagaagtatat 5123151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 5744128 - 5744083
Alignment:
Q  4 aatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  5744128 aatgtatattgtcaactgggtcatttattaagggacggagggagta 5744083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3443435 - 3443387
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||    
T  3443435 aataatgtatattgtcaactaggtcatttattaagggagggagagagta 3443387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20678636 - 20678588
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  20678636 aataatgcatattgtcaactaggtcatttattaagggacggaggaagta 20678588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25644572 - 25644620
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  25644572 aataatgtatattgtcaactaggtcatttattgaaggacggagggagta 25644620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26205752 - 26205704
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  26205752 aataatgcatattgtcaactaagtcatttattaagggacggagggagta 26205704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39260180 - 39260132
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  39260180 aataatgtatattgtcaactaggtcatctattaagggacggaggaagta 39260132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46803845 - 46803893
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  46803845 aataatgcatattgtcaactaggtcatttattaagggacagagggagta 46803893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 55190614 - 55190566
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||    
T  55190614 aataatgtatattgtcaactaggttatctattaagggacggagggagta 55190566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23603695 - 23603645
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagt 51  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  23603695 aataatgtatattgtcaactaggtcatctattgaggaacggagggagtagt 23603645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 50971650 - 50971692
Alignment:
Q  10 tattgtcaactaggtcatttattaagggacggagggagtagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  50971650 tattgtcaactaggtcatctattaagggacggagggagtagta 50971692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 19525758 - 19525717
Alignment:
Q  5 atgtatattgtcaactaggtcatttattaagggacggaggga 46  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  19525758 atgtatattgtcaactaggtcatttattgagggacggaggga 19525717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19652304 - 19652255
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtag 50  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  19652304 aataatgtatattgtcaactagatcatctattaagggacggaggaagtag 19652255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49768658 - 49768699
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgga 42  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  49768658 aataatgcatattgtcaactaggtcatttattaagggacgga 49768699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1377244 - 1377292
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||||    
T  1377244 aataatgtatattgtcaactggatcatttattaagggacagagggagta 1377292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3901187 - 3901139
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  3901187 aataatgcatattgtcaactagatcatttattaagggacggaggaagta 3901139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6922988 - 6922940
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  6922988 aataatgtatattatcaactaggtcatttattgaggaacggagggagta 6922940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28166487 - 28166535
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  28166487 aataatgcatattgtcaactaggtcatttattaagggacgaaggaagta 28166535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46212398 - 46212350
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  46212398 aataatgtatattgtcaactgagtcatttattaagggatggagggagta 46212350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39786405 - 39786354
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagta 52  Q
    |||||| |||||||||||||| ||||| |||||||||||| |||||||||||    
T  39786405 aataatatatattgtcaactaagtcatctattaagggacgaagggagtagta 39786354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 37688073 - 37688031
Alignment:
Q  9 atattgtcaactaggtcatttattaagggacggagggagtagt 51  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  37688073 atattgtcaactagatcatttattaaggaacggagggagtagt 37688031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 32956768 - 32956833
Alignment:
Q  48 tagtatattatagaatcacatacaat-annnnnnnnaaggacgaatcacatacaatcatattcacc 112  Q
    |||||||||||||||||||||||||| |        ||||||||||||||||||||||||||||||    
T  32956768 tagtatattatagaatcacatacaatcattttttttaaggacgaatcacatacaatcatattcacc 32956833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42187048 - 42187007
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgga 42  Q
    ||||||||||||||||||||||||||| |||||| |||||||    
T  42187048 aataatgtatattgtcaactaggtcatctattaaaggacgga 42187007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19170587 - 19170539
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| |||||||||||  |||||||||||| ||||||||||||||||    
T  19170587 aataatatatattgtcaaacaggtcatttatttagggacggagggagta 19170539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 21858959 - 21858919
Alignment:
Q  9 atattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  21858959 atattgtcaactagatcatttattaagggacggatggagta 21858919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 21914822 - 21914782
Alignment:
Q  9 atattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  21914822 atattgtcaactagatcatttattaagggacggatggagta 21914782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40250790 - 40250838
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||| ||||| ||||| |||||||| ||||||    
T  40250790 aataatgtatattgtcaactatgtcatctattatgggacggaaggagta 40250838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 3442570 - 3442609
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtat 53  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  3442570 gtcaactatgtcatttatttagggacggagggagtagtat 3442609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 3901365 - 3901400
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  3901365 gtcaactaggtcatttatttagggacggagggagta 3901400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 4264169 - 4264134
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4264169 gtcaactaggtcatttattgagggacggagggagta 4264134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 5744309 - 5744344
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  5744309 gtcaactaggtcatttatttagggacggagggagta 5744344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 10385074 - 10385109
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||| ||||||||||||||||||||||    
T  10385074 gtcaactaggtcacttattaagggacggagggagta 10385109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19633897 - 19633854
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagg 44  Q
    |||||| |||||||||||||||||||| |||| |||||||||||    
T  19633897 aataatatatattgtcaactaggtcatctattgagggacggagg 19633854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 46212576 - 46212611
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  46212576 gtcaactaggtcatttatttagggacggagggagta 46212611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 46803666 - 46803631
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  46803666 gtcaactaggtcatttatttagggacggagggagta 46803631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 47579322 - 47579287
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47579322 gtcaactaggtcatttatttagggacggagggagta 47579287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15264 - 15216
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15264 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 15216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31466406 - 31466358
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31466406 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 31466358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23474017 - 23473967
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagt 51  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23474017 aataatgtatattgtcaactaggtcatttattaagggacggatggagtagt 23473967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36819909 - 36819962
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtata 54  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  36819909 aataatgcatattgtcaactaggtcatttattaagggacggagggagtaatata 36819962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 47081193 - 47081242
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtag 50  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47081193 aataatgcatattgtcaactaggtcatttattaagggacggagggagtag 47081242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4612135 - 4612087
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4612135 aataatgtatattgtcaactgggtcatttattaagggacggagggagta 4612087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10464163 - 10464115
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10464163 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 10464115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19072982 - 19073030
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19072982 aataatgtatattgtcaactgggtcatttattaagggacggagggagta 19073030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34478056 - 34478008
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34478056 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 34478008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37950993 - 37950945
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37950993 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 37950945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 48531535 - 48531583
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48531535 aataatgtatattgtcaactaggtcatctattaagggacggagggagta 48531583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42834340 - 42834290
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagt 51  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  42834340 aataatgcatattgtcgactaggtcatttattaagggacggagggagtagt 42834290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35500795 - 35500747
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  35500795 aataatgtatattgtcaactaggtcaattattgagggacggagggagta 35500747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36859256 - 36859208
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  36859256 aataatgcatattgtcaactaagtcatttattaagggacggagggagta 36859208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37231611 - 37231563
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  37231611 aataatgtatattgtcaactaggtcgtttattgagggacggagggagta 37231563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 47538137 - 47538185
Alignment:
Q  2 ataatgtatattgtcaactaggtcatttattaagggacggagggagtag 50  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  47538137 ataatgtatattgtcaactaggtcatctattaaggggcggagggagtag 47538185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47713550 - 47713502
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  47713550 aataatgtatattgtcaactgggtcatttattaagggacagagggagta 47713502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24151629 - 24151580
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtag 50  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  24151629 aataatgtatattgtcaaataggtcacctattaagggacggagggagtag 24151580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 36905743 - 36905788
Alignment:
Q  5 atgtatattgtcaactaggtcatttattaagggacggagggagtag 50  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  36905743 atgtatattgtcaactgggtcatttatttagggacggagggagtag 36905788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28185459 - 28185411
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  28185459 aataatgcatattgtcaactatgtcatttattaagggacggagagagta 28185411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32618990 - 32618942
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  32618990 aataatgcatattgtcaattaggtcatttattaagggacggaaggagta 32618942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 42086678 - 42086635
Alignment:
Q  9 atattgtcaactaggtcatttattaagggacggagggagtagta 52  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  42086678 atattgtcaactaaatcatttattaagggacggagggagtagta 42086635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 36819731 - 36819693
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagta 52  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  36819731 gtcaactaggtcatttatttagggacggagggagtagta 36819693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21392231 - 21392276
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggaggga 46  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||    
T  21392231 aataatgtatattgtcaactaggttatttattaagagacgaaggga 21392276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 36643963 - 36644000
Alignment:
Q  12 ttgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  36643963 ttgtcaactaggtcatttattgagggacggagggagta 36644000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2400498 - 2400546
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| ||||    
T  2400498 aataatgcatattgtcaactatatcatttattaagggacggaggaagta 2400546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 31110842 - 31110886
Alignment:
Q  5 atgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||    
T  31110842 atgtatattgtcaactggatcatttatttagggacggagggagta 31110886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 2400320 - 2400285
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2400320 gtcaactaggtcatttatttagggacggagggagta 2400285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 28185634 - 28185669
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28185634 gtcaactaggtcatttatttagggacggagggagta 28185669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 19072803 - 19072769
Alignment:
Q  15 tcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||| ||||||||||||||||    
T  19072803 tcaactaggtcatttatttagggacggagggagta 19072769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 31110659 - 31110625
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagt 48  Q
    ||||||||||||||||||| |||||||||||||||    
T  31110659 gtcaactaggtcatttatttagggacggagggagt 31110625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 31466584 - 31466622
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagta 52  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  31466584 gtcaactaggtcacttatttagggacggagggagtagta 31466622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 34478237 - 34478277
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtata 54  Q
    ||||||||||| ||||| || ||||||||||||||||||||    
T  34478237 gtcaactaggttatttaatatgggacggagggagtagtata 34478277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25531991 - 25532039
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25531991 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 25532039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30529098 - 30529050
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30529098 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 30529050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3898619 - 3898571
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3898619 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 3898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16265246 - 16265294
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16265246 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 16265294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16266375 - 16266423
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16266375 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 16266423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26441847 - 26441895
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26441847 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 26441895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43680283 - 43680331
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43680283 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 43680331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45234897 - 45234849
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45234897 aataatgtatattgtcaactaggtcatttattaagagacggagggagta 45234849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48264859 - 48264811
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48264859 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 48264811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50876577 - 50876625
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50876577 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 50876625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 39354312 - 39354262
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagt 51  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  39354312 aataatgcatactgtcaactaggtcatttattaagggacggagggagtagt 39354262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1849914 - 1849962
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  1849914 aataatgtatattgtcaactgggtcatttattaagggacggatggagta 1849962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4605212 - 4605260
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||    
T  4605212 aataatgtatattgtcaaataggtcatctattaagggacggagggagta 4605260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29162056 - 29162104
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||    
T  29162056 aataatgtatattgtcaactagatcgtttattaagggacggagggagta 29162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32988397 - 32988349
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  32988397 aataatgtatattgtcaactggatcatttattaagggacggagggagta 32988349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38458943 - 38458991
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  38458943 aataatgtatattgtcaactgggtcatttattaagggatggagggagta 38458991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42708713 - 42708761
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  42708713 aataatgcatattgtcaactaggtcatttattaagggacggatggagta 42708761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52379202 - 52379250
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  52379202 aataatgcatattgtcaactaggtcatttattaaaggacggagggagta 52379250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 50539477 - 50539524
Alignment:
Q  5 atgtatattgtcaactaggtcatttattaagggacggagggagtagta 52  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  50539477 atgtatattgtcaactgagtcatttattaagggacggagggagtagta 50539524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 48219690 - 48219644
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggag 47  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||    
T  48219690 aataatgcatattgtcaactaggtcatttattaagggacggaaggag 48219644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 49805297 - 49805252
Alignment:
Q  4 aatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  49805297 aatgtatattgtcaactgggtcatttattaaggaacggagggagta 49805252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24982564 - 24982612
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  24982564 aataatatatattgtcaacaaggtcatttattgagggacggagggagta 24982612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37281305 - 37281353
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  37281305 aataatatatattgtcaactagatcatctattaagggacggagggagta 37281353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 48219868 - 48219906
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagta 52  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  48219868 gtcaactaggtcatttatttagggacggagggagtagta 48219906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23569722 - 23569674
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| |||||||||||  |||||||||||| ||||||||||||||||    
T  23569722 aataatatatattgtcaaacaggtcatttatttagggacggagggagta 23569674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 25531813 - 25531778
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25531813 gtcaactaggtcatttatttagggacggagggagta 25531778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 30529276 - 30529311
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30529276 gtcaactaggtcatttattgagggacggagggagta 30529311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 41855755 - 41855794
Alignment:
Q  15 tcaactaggtcatttattaagggacggagggagtagtata 54  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  41855755 tcaaataggtcatttattacgggacggagggagtagtata 41855794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 48265037 - 48265072
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  48265037 gtcaactaggtcatttatttagggacggagggagta 48265072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 50876399 - 50876364
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  50876399 gtcaactaggtcatttatttagggacggagggagta 50876364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 52379024 - 52378985
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtat 53  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  52379024 gtcaactagatcatttatttagggacggagggagtagtat 52378985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 28036972 - 28037001
Alignment:
Q  20 taggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||||||    
T  28036972 taggtcatttattaagggacggagggagta 28037001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 50777262 - 50777299
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagt 51  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  50777262 gtcaaataggtcacttattaagggacggagggagtagt 50777299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 38458763 - 38458723
Alignment:
Q  15 tcaactaggtcatttattaagggacggagggagtagtatat 55  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  38458763 tcaactaggtcatttattgagggacggaggaagtagcatat 38458723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41501655 - 41501607
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||| ||||||||||| ||| ||||||  |||||||||    
T  41501655 aataatgtatattgtgaactaggtcatctatcaagggattgagggagta 41501607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 41855564 - 41855524
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtata 54  Q
    |||||||  ||||||||||||||||||||||||||| ||||    
T  41855564 gtcaactgtgtcatttattaagggacggagggagtaatata 41855524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50481489 - 50481537
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||| |||| ||| |||| ||||||| ||||||||    
T  50481489 aataatgtatattgtcaaataggccatctattgagggacgtagggagta 50481537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39894994 - 39895045
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagta 52  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39894994 aataatgtatattgtcaactgggtcatttattaagggacggagggagtagta 39895045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 970351 - 970399
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  970351 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 970399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4299881 - 4299833
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4299881 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 4299833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5212970 - 5212922
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5212970 aataatgtatattgtcaactaggtcatttattaagagacggagggagta 5212922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22613757 - 22613709
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22613757 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 22613709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32002062 - 32002014
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32002062 aataatgtatattgtcaactgggtcatttattaagggacggagggagta 32002014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32334686 - 32334638
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32334686 aataatgtatattgtcaactgggtcatttattaagggacggagggagta 32334638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35448045 - 35447997
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35448045 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 35447997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42148520 - 42148568
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42148520 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 42148568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38698176 - 38698229
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtata 54  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  38698176 aataatgcatattgtcaactaagtcatttattaagggacggagggagtaatata 38698229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39036623 - 39036668
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggaggga 46  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  39036623 aataatgtatattgtcaactaggtcatctattaagggacggaggga 39036668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5364637 - 5364685
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  5364637 aataatgtatattgtcaactgggtcatttattaagggacggagagagta 5364685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16048298 - 16048346
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  16048298 aataatgtatattgtcaactaggtcatttattgagggacggacggagta 16048346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35290499 - 35290547
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  35290499 aataatgtatattgtcaactaggtcatctattaagggacggaggaagta 35290547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43067434 - 43067482
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  43067434 aataatgtatattgtcaactaggtcatttattgagggacggatggagta 43067482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14475278 - 14475230
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  14475278 aataatgtatattgtcaactaggtcatctattgaaggacggagggagta 14475230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23988790 - 23988838
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| ||||||||||||| |||||||||||||||||||| ||||||    
T  23988790 aataatgcatattgtcaactaagtcatttattaagggacggatggagta 23988838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 29627485 - 29627529
Alignment:
Q  5 atgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  29627485 atgtatattgtcaactgggtcatttatttagggacggagggagta 29627529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37843623 - 37843575
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  37843623 aataatgtatattgtcaagtaggtcatctattgagggacggagggagta 37843575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39405977 - 39406025
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  39405977 aataatgtatattgtcaactaggtcatttattgagggaaggatggagta 39406025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40512728 - 40512680
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  40512728 aataatgtatattgtcaactgagtcatttattaagggacggagagagta 40512680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37516358 - 37516401
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagg 44  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  37516358 aataatgtatattgtcaactaggttatctattaagggacggagg 37516401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4924886 - 4924829
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtatattat 58  Q
    |||||| ||||||||||| |||||||| |||||||||||||||| |||| | ||||||    
T  4924886 aataatatatattgtcaattaggtcatctattaagggacggaggaagtaatgtattat 4924829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 37304371 - 37304412
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtatat 55  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  37304371 gtcaactaggtcacttattcagggacggagggagtagtatat 37304412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 5364455 - 5364411
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtatattat 58  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||    
T  5364455 gtcaactaggtcacttatttagggacggagggagtggtatattat 5364411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43517108 - 43517060
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| |||||||||||||| ||||| |||||||||||||||| ||||    
T  43517108 aataatatatattgtcaactaagtcatctattaagggacggaggaagta 43517060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 23988614 - 23988579
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23988614 gtcaactaggtcatttatttagggacggagggagta 23988579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 29627303 - 29627268
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29627303 gtcaactaggtcatttatttagggacggagggagta 29627268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 35448223 - 35448258
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  35448223 gtcaactaggtcatttatttagggacggagggagta 35448258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 5213148 - 5213193
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtatattata 59  Q
    ||||||||||||| ||||| |||||||||||||||| ||| |||||    
T  5213148 gtcaactaggtcacttattcagggacggagggagtattatcttata 5213193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 16954840 - 16954881
Alignment:
Q  8 tatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||| ||||| ||||||| |||||||||||||    
T  16954840 tatattgtcaactaagtcatctattaagagacggagggagta 16954881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25563713 - 25563754
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgga 42  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||    
T  25563713 aataatgtacattgtcaactaggtcatctattaagcgacgga 25563754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 30351909 - 30351872
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagt 51  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  30351909 gtcaactaggtcacttattaagggacggatggagtagt 30351872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1830868 - 1830916
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||| || |||||||||| ||||||||| ||||||    
T  1830868 aataatatatattgtcaaatacgtcatttatttagggacggatggagta 1830916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41411205 - 41411157
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||| || |||||||||| ||||||||| ||||||    
T  41411205 aataatatatattgtcaaatacgtcatttatttagggacggatggagta 41411157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7442939 - 7442884
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtatatt 56  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  7442939 aataatgtatattgtcaactagatcatttattaagggacggagggagtattatatt 7442884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14707583 - 14707534
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtag 50  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14707583 aataatgcatattgtcaactaggtcatttattaagggacggagggagtag 14707534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18718452 - 18718500
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18718452 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 18718500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23671589 - 23671637
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23671589 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 23671637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40425297 - 40425249
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40425297 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 40425249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44283327 - 44283281
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggag 47  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  44283327 aataatgcatattgtcaactaggtcatttattaagggacggagggag 44283281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 27559791 - 27559836
Alignment:
Q  4 aatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  27559791 aatgtatattgtcaactgggtcatttattaagggacggagggagta 27559836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30708941 - 30708982
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30708941 aataatgtatattgtcaactaggtcatttattaagggacgga 30708982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3987280 - 3987232
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  3987280 aataatgcatattgtcaactaagtcatttattaagggacggagggagta 3987232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9877131 - 9877083
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||    
T  9877131 aataatgtatattgtcaattaggtcatctattaagggacggagggagta 9877083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14372290 - 14372338
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  14372290 aataatgcatattgtcaattaggtcatttattaagggacggagggagta 14372338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34827125 - 34827173
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34827125 aataatatatattgtcaactgggtcatttattaagggacggagggagta 34827173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44330597 - 44330645
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  44330597 aataatgtatattgtcaactgggtcatttaataagggacggagggagta 44330645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36198999 - 36198957
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggag 43  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  36198999 aataatgcatattgtcaactaggtcatttattaagggacggag 36198957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 4045278 - 4045233
Alignment:
Q  4 aatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||    
T  4045278 aatgtatattgtcaaatgggtcatttattaagggacggagggagta 4045233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20517631 - 20517679
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||||||||    
T  20517631 aataatgcatattgtcaactaagtcatttattaaggaacggagggagta 20517679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32775951 - 32775903
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  32775951 aataatgtatattgtcaactgggtcatctattgagggacggagggagta 32775903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41172805 - 41172757
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||| |||||||||||||||||| |||||||    
T  41172805 aataatgcatattgtcaactagatcatttattaagggacggggggagta 41172757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42038736 - 42038784
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||    
T  42038736 aataatgtatattgtcaactgaatcatttattaagggacggagggagta 42038784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 20917763 - 20917729
Alignment:
Q  15 tcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||    
T  20917763 tcaactaggtcatttattaagggacggagggagta 20917729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 40598342 - 40598384
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggag 43  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  40598342 aataatgtatattgtcaactaggtcatttattgagggagggag 40598384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 39418068 - 39418015
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtata 54  Q
    ||||||||||||||||||||| |||||  |||||| ||||||||||||| ||||    
T  39418068 aataatgtatattgtcaactaagtcatccattaagagacggagggagtattata 39418015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 4046064 - 4046104
Alignment:
Q  3 taatgtatattgtcaactaggtcatttattaagggacggag 43  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  4046064 taatatatattgtcaactaggtcatctattaagggacggag 4046104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13399153 - 13399105
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||| |||| |||| |||||||| |||||||    
T  13399153 aataatgtatattgtcaactagatcatctattgagggacggggggagta 13399105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24283008 - 24282956
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtat 53  Q
    |||||| ||||||||||||||| |||| |||| ||||||||| ||||||||||    
T  24283008 aataatatatattgtcaactagatcatctattgagggacggaaggagtagtat 24282956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41463565 - 41463517
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||| ||||||||| || |||||| ||||||    
T  41463565 aataatgtatattgtcaactagatcatttattgagagacggaaggagta 41463517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42020251 - 42020203
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||| ||||| || |||| ||||||||||||||||    
T  42020251 aataatgtatattgtcaaataggttatctattgagggacggagggagta 42020203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 14372112 - 14372077
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  14372112 gtcaactaggtcatttatttagggacggagggagta 14372077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 18718274 - 18718239
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18718274 gtcaactaggtcatttatttagggacggagggagta 18718239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 23671411 - 23671376
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23671411 gtcaactaggtcatttatttagggacggagggagta 23671376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 32776126 - 32776161
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||| |||||||||||||||||||||    
T  32776126 gtcaactaggtcatctattaagggacggagggagta 32776161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 34826947 - 34826912
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34826947 gtcaactaggtcatttatttagggacggagggagta 34826912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 40425476 - 40425510
Alignment:
Q  15 tcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||| ||||||||||||||||    
T  40425476 tcaactaggtcatttatttagggacggagggagta 40425510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 41463743 - 41463777
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagt 48  Q
    ||||||||||||||||||| |||||||||||||||    
T  41463743 gtcaactaggtcatttattgagggacggagggagt 41463777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 7461703 - 7461671
Alignment:
Q  17 aactaggtcatttattaagggacggagggagta 49  Q
    |||||||| ||||||||||||||||||||||||    
T  7461703 aactaggttatttattaagggacggagggagta 7461671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 14707760 - 14707792
Alignment:
Q  14 gtcaactaggtcatttattaagggacggaggga 46  Q
    ||||||||||||||||||| |||||||||||||    
T  14707760 gtcaactaggtcatttatttagggacggaggga 14707792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43925122 - 43925074
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||| |||| |||||| | |||| ||||||||||||||||    
T  43925122 aataatgtatattatcaaataggtcgtctattgagggacggagggagta 43925074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18992116 - 18992169
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtata 54  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  18992116 aataatgtatattgtcaactaggtcatttattaagggacggagcgagtaatata 18992169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8796262 - 8796310
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8796262 aataatgtatattgtcaactgggtcatttattaagggacggagggagta 8796310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20662107 - 20662059
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20662107 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 20662059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22020489 - 22020537
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  22020489 aataatgtatattgtcaactgggtcatttaataagggacggagggagta 22020537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25163377 - 25163425
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  25163377 aataatgtatattgtcaactatgtcatttattgagggacggagggagta 25163425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25435624 - 25435672
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  25435624 aataatgtatattgtcaactgggtcatttattaagggacggagagagta 25435672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 29979064 - 29979024
Alignment:
Q  9 atattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29979064 atattgtcaactaggtcatttattaagggacggagggagta 29979024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30237380 - 30237428
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  30237380 aataatgtatattgtcaactatgtcatttattaagggacgaagggagta 30237428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11114778 - 11114826
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| | |||||||||||| |||||||||||||    
T  11114778 aataatgtatattgtcaactggatcatttattaagagacggagggagta 11114826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 16696060 - 16696016
Alignment:
Q  5 atgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  16696060 atgtatattgtcaactaggtcatctattgagggacggagggagta 16696016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31855031 - 31855079
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  31855031 aataacgtatattgtcaactgagtcatttattaagggacggagggagta 31855079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 33121577 - 33121542
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||||||||||||    
T  33121577 gtcaactaggtcatttattaagggacggagggagta 33121542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24150954 - 24151007
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtata 54  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||||| ||||    
T  24150954 aataatgcatattgtcaactaaattatttattaagggacggagggagtattata 24151007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 643475 - 643431
Alignment:
Q  5 atgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||    
T  643475 atgtatattgtcaactgagtcatttatttagggacggagggagta 643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7097921 - 7097873
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| |||||||||||||   ||||||||||||||||||||||||||    
T  7097921 aataatctatattgtcaactgaatcatttattaagggacggagggagta 7097873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 643657 - 643692
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  643657 gtcaactaggtcatttatttagggacggagggagta 643692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 2913123 - 2913158
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||| ||||||||||||||||||||||    
T  2913123 gtcaactaggtcacttattaagggacggagggagta 2913158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 11114599 - 11114565
Alignment:
Q  15 tcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||| ||||||||||||||||    
T  11114599 tcaactaggtcatttattgagggacggagggagta 11114565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13207001 - 13206953
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||| |||||||||||| |||||||| |||| || |||||||||||||    
T  13207001 aataaagtatattgtcaaataggtcatctattgagtgacggagggagta 13206953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2986538 - 2986586
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2986538 aataatgtatattgtcaactaagtcatttattaagggacggagggagta 2986586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3293149 - 3293101
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3293149 aataatgtatattgtcaactgggtcatttattaagggacggagggagta 3293101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8350928 - 8350880
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8350928 aataatgtatattgtcaactaggtcatttattaagggatggagggagta 8350880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14522592 - 14522640
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14522592 aataatgtatattgtcaactaggtcatctattaagggacggagggagta 14522640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18809489 - 18809537
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18809489 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 18809537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23249065 - 23249113
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23249065 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 23249113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30290137 - 30290185
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30290137 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 30290185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43066339 - 43066387
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43066339 aataatgtatattgtcgactaggtcatttattaagggacggagggagta 43066387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45082025 - 45082073
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45082025 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 45082073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 2805516 - 2805476
Alignment:
Q  9 atattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2805516 atattgtcaactaggtcatttattaagggacggagggagta 2805476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6471058 - 6471106
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6471058 aataatgtatattgtcaactaggtcatctattaagggacagagggagta 6471106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29791155 - 29791203
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  29791155 aataatgcatattgtcaactaggtcatttattaagggacgtagggagta 29791203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30380743 - 30380791
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  30380743 aataatgtatattgtcaactggatcatttattaagggacggagggagta 30380791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31127853 - 31127805
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  31127853 aataatatatattgtcaactaggtcatttattgagggacggagggagta 31127805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 38845823 - 38845866
Alignment:
Q  4 aatgtatattgtcaactaggtcatttattaagggacggagggag 47  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  38845823 aatgtatattgtcaactgggtcatttattaagggacggagggag 38845866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 40013864 - 40013919
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtatatt 56  Q
    ||||||||||||||||||||  |||||||| ||||||||||||||| |||||||||    
T  40013864 aataatgtatattgtcaactgagtcatttactaagggacggagggaatagtatatt 40013919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 40013686 - 40013644
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtatatt 56  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  40013686 gtcaactaggtcatttattaagggacggagggagtattatatt 40013644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13138180 - 13138132
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  13138180 aataatgtatattatcaactaggtcatctattaaaggacggagggagta 13138132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37710112 - 37710160
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  37710112 aataatgtatattgtcaactgagtcatttattaagggacggatggagta 37710160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39361338 - 39361378
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgg 41  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  39361338 aataatgcatattgtcaactaggtcatttattaagggacgg 39361378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6470662 - 6470624
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggac 39  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  6470662 aataatgtatattgtcaactaggtcatctattaagggac 6470624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12893741 - 12893791
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagt 51  Q
    ||||||| |||||||||| ||||||||||| | ||||||||||||||||||    
T  12893741 aataatgcatattgtcaaataggtcatttactgagggacggagggagtagt 12893791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1580813 - 1580765
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagta 52  Q
    ||||||||||||||||   ||||||||||||||||| |||||||||||||||    
T  1580813 aataatgtatattgtc---taggtcatttattaaggaacggagggagtagta 1580765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38739870 - 38739918
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||||| ||||||||||||  ||||||||||||||    
T  38739870 aataatatatattgtcaactgggtcatttattaccggacggagggagta 38739918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 1580991 - 1581026
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  1580991 gtcaactaggtcatttattcagggacggagggagta 1581026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 11538915 - 11538954
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtat 53  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  11538915 gtcaactatgtcatgtattaagggacggagggagtagtat 11538954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 14583756 - 14583717
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtat 53  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  14583756 gtcaactatgtcatgtattaagggacggagggagtagtat 14583717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 29708787 - 29708822
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||| ||||||||||||||||||||||    
T  29708787 gtcaactaggtcacttattaagggacggagggagta 29708822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 29790977 - 29790942
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29790977 gtcaactaggtcatttatttagggacggagggagta 29790942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 30289959 - 30289924
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30289959 gtcaactaggtcatttatttagggacggagggagta 30289924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 37709934 - 37709899
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  37709934 gtcaactaggtcatttatttagggacggagggagta 37709899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 38845235 - 38845200
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  38845235 gtcaactaggtcatttatttagggacggagggagta 38845200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 43066162 - 43066122
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtata 54  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  43066162 gtcaactaggtcatttatttagggacggaggtagtactata 43066122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7459868 - 7459820
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7459868 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 7459820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8559053 - 8559005
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8559053 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 8559005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10435332 - 10435380
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10435332 aataatgtatattgtcaactaggtcatttattgagggacggagggagta 10435380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18659265 - 18659313
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18659265 aataatgcatattgtcaactaggtcatttattaagggacggagggagta 18659313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29728146 - 29728098
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29728146 aataatgtatattgtcaactagatcatttattaagggacggagggagta 29728098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34827466 - 34827514
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34827466 aataatatatattgtcaactaggtcatttattaagggacggagggagta 34827514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38833876 - 38833924
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38833876 aataatgtatattgtcaactgggtcatttattaagggacggagggagta 38833924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54840176 - 54840128
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54840176 aataatgtatattgtcaactgggtcatttattaagggacggagggagta 54840128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4238542 - 4238494
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  4238542 aataatgtatattgtcaactaagtcatttattgagggacggagggagta 4238494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10571192 - 10571144
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  10571192 aataatgtatattgtcaactgggttatttattaagggacggagggagta 10571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21907209 - 21907257
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  21907209 aataatgtatattgtcaactgagtcatttattaagggacggagggagta 21907257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27849149 - 27849197
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  27849149 aataatgtatattgtcaactaggtcatctattaagggacggaaggagta 27849197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32951184 - 32951136
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  32951184 aataatgtatattgtcaactagatcatttattgagggacggagggagta 32951136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37833113 - 37833161
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  37833113 aataatgcatattgttaactaggtcatttattaagggacggagggagta 37833161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 52668534 - 52668486
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  52668534 aataatgcatattgtcaactaggtgatttattaagggacggagggagta 52668486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38492264 - 38492303
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38492264 aataatgtatattgtcaactaggtcatttattaagggacg 38492303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1327525 - 1327566
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgga 42  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  1327525 aataatgcatattgtcaactaggtcatttattaagggacgga 1327566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47638268 - 47638313
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggaggga 46  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  47638268 aataatgtatattgtcaattaggtcatctattaagggacggaggga 47638313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17053077 - 17053125
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  17053077 aataatgtatattgtcaactgggtcatttattgagggacggagagagta 17053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36665231 - 36665275
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggaggg 45  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  36665231 aataatgtatattgtcaaataggtcatctattaagggacggaggg 36665275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45167512 - 45167560
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||    
T  45167512 aataatgtatattgtcaactggatcatatattaagggacggagggagta 45167560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46483761 - 46483809
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  46483761 aataatgtatattgtcaactagatcatctattaagggacagagggagta 46483809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48706894 - 48706846
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  48706894 aataatatatattgtcaactggatcatttattaagggacggagggagta 48706846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51062603 - 51062651
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  51062603 aataatgtatattatcaactgagtcatttattaagggacggagggagta 51062651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53066583 - 53066631
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  53066583 aataatatatattgtcaactagatcatctattaagggacggagggagta 53066631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3547468 - 3547420
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  3547468 aataatgtatattgtcaaataggtcatctattgagggacgaagggagta 3547420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28690710 - 28690758
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| ||||||||||| |||||||| |||| ||||||||||||||||    
T  28690710 aataatatatattgtcaaataggtcatctattgagggacggagggagta 28690758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32285224 - 32285176
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||| ||| |||||||| ||||| ||||||    
T  32285224 aataatgtatattgtcaactaggccatctattaaggaacggatggagta 32285176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 7460046 - 7460085
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtagtat 53  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  7460046 gtcaactaggtcatttatttagggacggaggaagtagtat 7460085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 29728324 - 29728359
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29728324 gtcaactaggtcatttattgagggacggagggagta 29728359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48143976 - 48144017
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgga 42  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  48143976 aataatatatattgtcaaataggtcatttattgagggacgga 48144017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 52668713 - 52668746
Alignment:
Q  16 caactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||| ||||||||||||||||    
T  52668713 caactaggtcatttatttagggacggagggagta 52668746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 2643103 - 2643067
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtag 50  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  2643103 gtcaactatgtcatgtattaagggacggagggagtag 2643067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 49057891 - 49057855
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtag 50  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  49057891 gtcaactaggtcatttattgagggacggaggaagtag 49057855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49058069 - 49058117
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| |||||||||||  ||||||| |||| ||||||||||||||||    
T  49058069 aataatatatattgtcaaagaggtcatctatttagggacggagggagta 49058117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54673991 - 54674039
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    |||||| |||||||||||  || ||||||||| ||||||||||||||||    
T  54673991 aataatatatattgtcaaacagatcatttatttagggacggagggagta 54674039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 54840354 - 54840390
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagtag 50  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  54840354 gtcaactaggtcatttatttagggatggagggagtag 54840390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41265 - 41212
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagtagtata 54  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  41265 aataacgtatattgtcaactaagtcatttattaagagacggagggagtagtata 41212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 41443 - 41478
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  41443 gtcaactaggtcatttattgagggacggagggagta 41478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44156 - 44115
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgga 42  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  44156 aataatgcatattgtcaactaggtcatttattaagggacgga 44115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 44334 - 44369
Alignment:
Q  14 gtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44334 gtcaactaggtcatttatttagggacggagggagta 44369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 117542 - 117579
Alignment:
Q  9 atattgtcaactaggtcatttattaagggacggaggga 46  Q
    ||||||||||||||||||||||||||||||||||||||    
T  117542 atattgtcaactaggtcatttattaagggacggaggga 117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1321 - 1369
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  1321 aataatgtatattgtcaactaggtcatctattgacggacggagggagta 1369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12965 - 13005
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgg 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12965 aataatgtatattgtcaactgggtcatttattaagggacgg 13005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10606 - 10646
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgg 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  10606 aataatgtatattgtcaactgggtcatttattaagggacgg 10646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14272 - 14312
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacgg 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  14272 aataatgtatattgtcaactgggtcatttattaagggacgg 14312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14551 - 14599
Alignment:
Q  1 aataatgtatattgtcaactaggtcatttattaagggacggagggagta 49  Q
    ||||||||||||||||||||||||||| ||||  |||||||| ||||||    
T  14551 aataatgtatattgtcaactaggtcatctattgtgggacggatggagta 14599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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