View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14368_low_16 (Length: 315)
Name: NF14368_low_16
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14368_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 6285313 - 6285012
Alignment:
| Q |
1 |
cacaaattttctatgccctatgttccgggaaaataaaatacgaataatatcaaagaaatgagcatcttctggattcaaaatcatataactatcagcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6285313 |
cacaaattttctatgccctatgttccgggaaaataaaatacgaataatatcaaagaaatgagcatcttctggattcaaaatcatataactatcagcaaaa |
6285214 |
T |
|
| Q |
101 |
cccttatcgcaagtagatgccatggctaaaggtagctaatagcacaataattaatgaagaggagaaaaagaatgatatactgcttttagtctatggttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
6285213 |
cccttatcgcaagtagatgccatggctaaaggtagctaatagcacaataattaatgaagaggagagaaagaatgatatactgcttttagcctatggttga |
6285114 |
T |
|
| Q |
201 |
gagtgtcttgactcttgactatagttaagtata--tatagctgtagagacacgtttatttttgttgtaactagttaattaatacgagtatattttgtcac |
298 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6285113 |
gagtgtcttgactcttgattatagttaagtatatatatagctgtagagacacgtttatttttgttgtaactagttaattaatacgagtatattttgtcac |
6285014 |
T |
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| Q |
299 |
at |
300 |
Q |
| |
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|| |
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|
| T |
6285013 |
at |
6285012 |
T |
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