View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14368_low_21 (Length: 242)
Name: NF14368_low_21
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14368_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 37106530 - 37106600
Alignment:
| Q |
166 |
ttcttacctgtggtcatgatagctgatttaatagctgcaggactccaagaaggatacaaggttttcaaaag |
236 |
Q |
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| T |
37106530 |
ttcttacctgttgtcatgatagctgatttaatagcagcaggagtccaagaaggatacaaggatctcaaaag |
37106600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 24268775 - 24268731
Alignment:
| Q |
169 |
ttacctgtggtcatgatagctgatttaatagctgcaggactccaa |
213 |
Q |
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| T |
24268775 |
ttacttgtagtcatgatagcagatttaaaagctgcaggactccaa |
24268731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 31203090 - 31203030
Alignment:
| Q |
170 |
tacctgtggtcatgatagctgatttaatagctgcaggactccaagaaggatacaaggtttt |
230 |
Q |
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| T |
31203090 |
tacctgtggtcatgatagctgatttaatagctgctggactccaattaggatgcaatgtttt |
31203030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 31144723 - 31144766
Alignment:
| Q |
170 |
tacctgtggtcatgatagctgatttaatagctgcaggactccaa |
213 |
Q |
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| T |
31144723 |
taccagtggtcatgatagctgatttaatagctgcaggactccaa |
31144766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 31049651 - 31049694
Alignment:
| Q |
170 |
tacctgtggtcatgatagctgatttaatagctgcaggactccaa |
213 |
Q |
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| T |
31049651 |
tacctgtggtcataatagctgatttaatagctgctggactccaa |
31049694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 31162547 - 31162590
Alignment:
| Q |
170 |
tacctgtggtcatgatagctgatttaatagctgcaggactccaa |
213 |
Q |
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| T |
31162547 |
taccagtggtcatgatagctgatttaatagctgctggactccaa |
31162590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 31061974 - 31062017
Alignment:
| Q |
170 |
tacctgtggtcatgatagctgatttaatagctgcaggactccaa |
213 |
Q |
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| T |
31061974 |
taccagtggtcataatagctgatttaatagctgctggactccaa |
31062017 |
T |
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