View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14368_low_22 (Length: 237)
Name: NF14368_low_22
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14368_low_22 |
 | |
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| [»] scaffold0174 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0381 (1 HSPs) |
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| [»] scaffold1559 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 24564213 - 24564417
Alignment:
| Q |
21 |
gttgcattaaaatctgaatccatatatagttctcttaaactacactaatgctctcgtagatgtttaaagggttatgctgaattttcatggaaaaagtagc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |
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|
| T |
24564213 |
gttgcattaaaatctgaatccatatatagttctcttaaactacactaatgctctcgtagatgtttaaaaggttatgctgaattttcatggaaaacgcagc |
24564312 |
T |
|
| Q |
121 |
atgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaacttt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24564313 |
atgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatatacaacttc |
24564412 |
T |
|
| Q |
221 |
gatga |
225 |
Q |
| |
|
||||| |
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|
| T |
24564413 |
gatga |
24564417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 24605247 - 24605452
Alignment:
| Q |
21 |
gttgcattaaaatctgaatccatatatagttctcttaaactacactaatgctctcgtagatgtttaaagggttatgctgaattttcatggaaaaagtagc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |
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|
| T |
24605247 |
gttgcattaaaatctgaatccatatatagttctcttaaactacactaatgctctcgtagatgtttaaaaggttatgctgaattttcatggaaaacgcagc |
24605346 |
T |
|
| Q |
121 |
atgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaacc-aaaagaaactgaaagctaacaaccatatctacaactt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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|
| T |
24605347 |
atgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaaagaaactgaaagctaacaaccatatatacaactt |
24605446 |
T |
|
| Q |
220 |
tgatga |
225 |
Q |
| |
|
||||| |
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|
| T |
24605447 |
cgatga |
24605452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 11090974 - 11091111
Alignment:
| Q |
88 |
agggttatgctgaattttcatggaaaaagtagcatgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaag |
187 |
Q |
| |
|
|||||||| ||||| ||||| || ||| | |||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
11090974 |
agggttatactgaaatttcaagggaaacgcagcatgacccacatgtggtattttaatcctaactaaagttctaaaaatataaatggggtccaaccaaaag |
11091073 |
T |
|
| Q |
188 |
aaactgaaagctaacaaccatatctacaactttgatga |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
11091074 |
caactcaaagctaacaaccatatctacaactttcatga |
11091111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 12954 - 13091
Alignment:
| Q |
88 |
agggttatgctgaattttcatggaaaaagtagcatgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaag |
187 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||| || || ||||| |||||| ||| ||||||| ||||||| ||||| | ||||||||||||| |
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|
| T |
12954 |
agggttatgctgaaatttcatggaaaacgcagcatgacccacgtgcggtatattaatcctaactaaagttataaaaatctaaatagggtccaaccaaaag |
13053 |
T |
|
| Q |
188 |
aaactgaaagctaacaaccatatctacaactttgatga |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
13054 |
caactcaaagctaacaaccatatctacaactttcatga |
13091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 1255 - 1392
Alignment:
| Q |
88 |
agggttatgctgaattttcatggaaaaagtagcatgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaag |
187 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||| || || ||||| |||||| ||| ||||||| ||||||| ||||| | ||||||||||||| |
|
|
| T |
1255 |
agggttatgctgaaatttcatggaaaacgcagcatgacccacgtgcggtatattaatcctaactaaagttataaaaatctaaatagggtccaaccaaaag |
1354 |
T |
|
| Q |
188 |
aaactgaaagctaacaaccatatctacaactttgatga |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
1355 |
caactcaaagctaacaaccatatctacaactttcatga |
1392 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 20872968 - 20872827
Alignment:
| Q |
84 |
ttaaagggttatgctgaattttcatggaaaaagtagcatgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaacca |
183 |
Q |
| |
|
||||||||| |||||||| ||| |||||||| | |||||||| || || ||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
20872968 |
ttaaagggtgatgctgaagttttatggaaaacgaagcatgacccacgtgcagtattttaatcataactaaacttctaaaaatttaaatggagtccaacca |
20872869 |
T |
|
| Q |
184 |
aaagaaactgaaagctaacaaccatatctacaactttgatga |
225 |
Q |
| |
|
||| ||||||||| || |||||||| ||||||||| |||| |
|
|
| T |
20872868 |
aaaccaactgaaagttagaaaccatatatacaacttttatga |
20872827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 9886263 - 9886363
Alignment:
| Q |
86 |
aaagggttatgctgaattttcatggaaaaagtagcatgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaa |
185 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9886263 |
aaagggttatgctgaaatttcatggaaagcgcagcatgacgtacatgctttattttaatcataagtcaagttctaaaaatttaaatggagtccaaccaaa |
9886362 |
T |
|
| Q |
186 |
a |
186 |
Q |
| |
|
| |
|
|
| T |
9886363 |
a |
9886363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 12249707 - 12249650
Alignment:
| Q |
168 |
aaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatga |
225 |
Q |
| |
|
|||||||||| ||| ||| | || |||||||||||| |||||||||||||||| |||| |
|
|
| T |
12249707 |
aaatggagtcaaacaaaaggcaaatgaaagctaacatccatatctacaactttcatga |
12249650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0381 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0381
Description:
Target: scaffold0381; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 12281 - 12181
Alignment:
| Q |
86 |
aaagggttatgctgaattttcatggaaaaagtagcatgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaa |
185 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12281 |
aaagggttatgctgaaatttcatggaaagcgcagcatgacgtacatgctttattttaatcataagtcaagttctaaaaatttaaatggagtccaaccaaa |
12182 |
T |
|
| Q |
186 |
a |
186 |
Q |
| |
|
| |
|
|
| T |
12181 |
a |
12181 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 22497968 - 22497877
Alignment:
| Q |
134 |
ggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatga |
225 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||||||||||||||||| ||| ||||| |||||| |||||| ||||||||| |||| |
|
|
| T |
22497968 |
ggtattttaatcataaatcaagttctaaaaatctaaatggagtccaaccaaaataaaatgaaatctaacatccatatttacaactttcatga |
22497877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 22497641 - 22497608
Alignment:
| Q |
192 |
tgaaagctaacaaccatatctacaactttgatga |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
22497641 |
tgaaagctaacaaccatatctacaactttcatga |
22497608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 29638878 - 29638935
Alignment:
| Q |
168 |
aaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatga |
225 |
Q |
| |
|
|||||||||| ||||||||| || |||||| ||||| ||| |||||||||||| |||| |
|
|
| T |
29638878 |
aaatggagtcaaaccaaaagcaaatgaaagataacatccacatctacaactttcatga |
29638935 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 17451065 - 17451144
Alignment:
| Q |
134 |
ggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatcta |
213 |
Q |
| |
|
||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||| |||| |
|
|
| T |
17451065 |
ggtattttaataataactcaagttctaaaaatgtaaatggagtccaaccaaaagaaaatgaaatctaacatccatgtcta |
17451144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 20761651 - 20761702
Alignment:
| Q |
134 |
ggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaa |
185 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
20761651 |
ggtattttaatcataactcaagttctaaaaatttaaatggagttcaaccaaa |
20761702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 21493180 - 21493051
Alignment:
| Q |
91 |
gttatgctgaattttcatggaaaaagtagcatgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaa |
190 |
Q |
| |
|
|||||||| || ||||||| |||| ||| ||||| | ||||| ||||||| ||||||| | |||||||| |||| |||||| ||||||||||| | || |
|
|
| T |
21493180 |
gttatgctaaagtttcatgaaaaatgtaacatgaactccatgtagtattttgatcataactcaagttctataaatctaaatgaagtccaaccaatggcaa |
21493081 |
T |
|
| Q |
191 |
ctgaaagctaacaaccatatctacaacttt |
220 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |
|
|
| T |
21493080 |
atgaaagctaacatccatatcttcaacttt |
21493051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1559 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1559
Description:
Target: scaffold1559; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 942 - 869
Alignment:
| Q |
89 |
gggttatgctgaattttcatggaaaaagtagcatgacttacatgtggtattttaatcataagtaaagttctaaa |
162 |
Q |
| |
|
|||||||| |||| ||||||||||| | |||||||| ||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
942 |
gggttatgttgaaagttcatggaaaacgcagcatgacccacatgcggtattttaatcataattcaagttataaa |
869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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