View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14368_low_24 (Length: 217)
Name: NF14368_low_24
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14368_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 40234650 - 40234483
Alignment:
| Q |
1 |
ggtaatgaaatagcagcctatcatcacatattgccacaaatcaacacaacacataccgaaaagagaggagaaatacgtaaatggaaagatggtcgagtct |
100 |
Q |
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| T |
40234650 |
ggtaatgaaatagcagcctgtcatcacatattggcacaaatcaacacaacacatatcgaaaagagaggagaaatacgtaaatggaaagatggtcgagtct |
40234551 |
T |
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| Q |
101 |
ttgtgctagggtggccagatttttgtagaaagagcaatattacagaaaatgatagatgcttgtgtgaa |
168 |
Q |
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| T |
40234550 |
ttgagctagggtgggcagatttttgtagaaagagcaagattacagaaaatgatagatgcttgtgtgaa |
40234483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 17455639 - 17455803
Alignment:
| Q |
4 |
aatgaaatagcagcctatcatcacatattgccacaaatcaacacaacacataccgaaaagagaggagaaatacgtaaatggaaagatggtcgagtctttg |
103 |
Q |
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| T |
17455639 |
aatgaaatagaagcctatcatcacatcttgccacaaatcagcacaagacataccgaaaagagaggtgaaatacgtacttggaaaaatggccgagtcttgg |
17455738 |
T |
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| Q |
104 |
tgctagggtggccagatttttgtagaaagagcaatattacagaaaatgatagatgcttgtgtgaa |
168 |
Q |
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| T |
17455739 |
tgctagggtgggaagatttttgtagaaagtgcaagataacagaaaatgatagatgcttgtgtgaa |
17455803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 17393133 - 17392983
Alignment:
| Q |
11 |
tagcagcctatcatcacatattgccacaaatcaacacaacacataccgaaaagagaggagaaatacgtaaatggaaagatggtcgagtctttgtgctagg |
110 |
Q |
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| T |
17393133 |
tagcagcctatcatcacatcttgccacaaatcagcacaatacatatcgaaaagagaggccaagtacgtacatggagagatggtcgagtacgtgtgctagg |
17393034 |
T |
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| Q |
111 |
gtggccagatttttgtagaaagagcaatattacagaaaatgatagatgctt |
161 |
Q |
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| T |
17393033 |
gtgggaagatttttgtagaaagagcaagatcacagaaaatgatagttgctt |
17392983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 17461788 - 17461947
Alignment:
| Q |
9 |
aatagcagcctatcatcacatattgccacaaatcaacacaacacataccgaaaagagaggagaaatacgtaaatggaaagatggtcgagtctttgtgcta |
108 |
Q |
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| T |
17461788 |
aatagcagcctatcgtcatatattgccgcagatgagaacaaaacatattgaaaagagaggagaagtacgtaaatggaaagatggccgagtatttgtgcga |
17461887 |
T |
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| Q |
109 |
gggtggccagatttttgtagaaagagcaatattacagaaaatgatagatgcttgtgtgaa |
168 |
Q |
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| T |
17461888 |
gggtgggaagatttctgcagaaagagcaaaatcacagaaaatgataaatgcttgtgtgaa |
17461947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 7281499 - 7281545
Alignment:
| Q |
119 |
atttttgtagaaagagcaatattacagaaaatgatagatgcttgtgt |
165 |
Q |
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| T |
7281499 |
atttttgtagaaagagcaagatcacataaaatgataaatgcttgtgt |
7281545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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