View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14368_low_4 (Length: 530)

Name: NF14368_low_4
Description: NF14368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14368_low_4
NF14368_low_4
[»] chr4 (4 HSPs)
chr4 (218-340)||(54189273-54189395)
chr4 (218-340)||(8569817-8569940)
chr4 (418-519)||(8570012-8570121)
chr4 (418-519)||(54189092-54189201)
[»] chr3 (2 HSPs)
chr3 (218-340)||(28695778-28695901)
chr3 (418-519)||(28695972-28696081)
[»] chr7 (4 HSPs)
chr7 (217-280)||(24511458-24511521)
chr7 (218-280)||(25035900-25035962)
chr7 (469-519)||(3368185-3368235)
chr7 (469-519)||(9891834-9891884)
[»] chr5 (2 HSPs)
chr5 (219-271)||(17039399-17039451)
chr5 (218-280)||(14417581-14417644)
[»] chr8 (1 HSPs)
chr8 (52-97)||(29387216-29387261)
[»] chr1 (1 HSPs)
chr1 (224-271)||(43532021-43532068)
[»] scaffold0957 (1 HSPs)
scaffold0957 (218-260)||(3070-3112)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 54189395 - 54189273
Alignment:
Q  218 cactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcacttcaacaattattttcaatattataaaaataaca 317  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  54189395 cactacgacacatataaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattattttcaatattataaaaataata 54189296  T
Q  318 ttttaaccacagttttatttcac 340  Q
    ||| ||| |||||||||||||||    
T  54189295 tttaaactacagttttatttcac 54189273  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 8569817 - 8569940
Alignment:
Q  218 cactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcacttcaacaatta-ttttcaatattataaaaataac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  8569817 cactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattatttttcaatattataaaaataac 8569916  T
Q  317 attttaaccacagttttatttcac 340  Q
    |||| |||  ||| ||||||||||    
T  8569917 atttaaacttcagatttatttcac 8569940  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 418 - 519
Target Start/End: Original strand, 8570012 - 8570121
Alignment:
Q  418 cagatatctctctcatccaatcacttttcccagacgggctttatcccaaaatc--------aaaatcgcttaatcaaaatctcttcatgacatctcttca 509  Q
    ||||||||||||||||  ||||||||||| |||| ||||||||||||||||||        ||||| ||||||||||||||||||||||||||||| |||    
T  8570012 cagatatctctctcatagaatcacttttctcagaagggctttatcccaaaatcgctttgtcaaaattgcttaatcaaaatctcttcatgacatctcctca 8570111  T
Q  510 tcagtttcat 519  Q
    ||||||||||    
T  8570112 tcagtttcat 8570121  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 418 - 519
Target Start/End: Complemental strand, 54189201 - 54189092
Alignment:
Q  418 cagatatctctctcatccaatcacttttcccagacgggctttatcccaaaat--------caaaatcgcttaatcaaaatctcttcatgacatctcttca 509  Q
    ||||||||||||||||  ||||||||||| |||| |||||||||||||||||        |||||| ||||||||||||||||||||||||||||| |||    
T  54189201 cagatatctctctcatagaatcacttttctcagaagggctttatcccaaaatagctttgtcaaaattgcttaatcaaaatctcttcatgacatctcctca 54189102  T
Q  510 tcagtttcat 519  Q
    ||||||||||    
T  54189101 tcagtttcat 54189092  T

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Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 28695778 - 28695901
Alignment:
Q  218 cactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcacttcaacaatta-ttttcaatattataaaaataac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  28695778 cactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattatttttcaatattataaaaataac 28695877  T
Q  317 attttaaccacagttttatttcac 340  Q
    |||| |||  ||| ||||||||||    
T  28695878 atttaaacttcagatttatttcac 28695901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 418 - 519
Target Start/End: Original strand, 28695972 - 28696081
Alignment:
Q  418 cagatatctctctcatccaatcacttttcccagacgggctttatcccaaaatc--------aaaatcgcttaatcaaaatctcttcatgacatctcttca 509  Q
    ||||||||||||||||  ||||||||||| |||| ||||||||||||||||||        ||||| ||||||||||||||||||||||||||||| |||    
T  28695972 cagatatctctctcatagaatcacttttctcagaagggctttatcccaaaatcgctttgtcaaaattgcttaatcaaaatctcttcatgacatctcctca 28696071  T
Q  510 tcagtttcat 519  Q
    ||||||||||    
T  28696072 tcagtttcat 28696081  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 24511521 - 24511458
Alignment:
Q  217 gcactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacat 280  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24511521 gcactactacacatatgaccttttgcaacatattatatgtgacattttttaaaaagtgttacat 24511458  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 25035962 - 25035900
Alignment:
Q  218 cactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacat 280  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  25035962 cactactacgcatatgactttttgcaacatcttatatgtgacattttttagaaagtgttacat 25035900  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 469 - 519
Target Start/End: Complemental strand, 3368235 - 3368185
Alignment:
Q  469 tcaaaatcgcttaatcaaaatctcttcatgacatctcttcatcagtttcat 519  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  3368235 tcaaaattgcttaatcaaaatctcttcatgacatctcctcatcagtttcat 3368185  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 469 - 519
Target Start/End: Complemental strand, 9891884 - 9891834
Alignment:
Q  469 tcaaaatcgcttaatcaaaatctcttcatgacatctcttcatcagtttcat 519  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  9891884 tcaaaatcgcttaatcaaaatcgcttcatgacatcatttcatcagtttcat 9891834  T

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Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 17039451 - 17039399
Alignment:
Q  219 actactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17039451 actactacacatatgaccttttgcaacatcttatatgtgacatattttaaaaa 17039399  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 14417644 - 14417581
Alignment:
Q  218 cactactacacatatgaccttttgcaacatcttatatgtgacatt-ttttaaaaagtgttacat 280  Q
    |||||||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||    
T  14417644 cactactacacatatgaagttttgcaacatcttttatgtgacatttttttaaaaagtgttacat 14417581  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 29387261 - 29387216
Alignment:
Q  52 tagaaatcatttaataaatttgcaaaagaaatatagatatgttaac 97  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  29387261 tagaaatcatttaataaacttggaaaagaaatatagatatgttaac 29387216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 43532068 - 43532021
Alignment:
Q  224 tacacatatgaccttttgcaacatcttatatgtgacattttttaaaaa 271  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  43532068 tacacgtatgactttttgcaacatcttatatgtgacattttataaaaa 43532021  T

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Target: scaffold0957 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 3070 - 3112
Alignment:
Q  218 cactactacacatatgaccttttgcaacatcttatatgtgaca 260  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  3070 cactactacacataagacattttgcaacatcttatatgtgaca 3112  T

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