View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14369_high_1 (Length: 588)

Name: NF14369_high_1
Description: NF14369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14369_high_1
NF14369_high_1
[»] chr4 (9 HSPs)
chr4 (15-353)||(5832782-5833120)
chr4 (15-323)||(5828635-5828943)
chr4 (15-321)||(5822936-5823242)
chr4 (489-574)||(5832688-5832773)
chr4 (504-572)||(30838205-30838273)
chr4 (500-566)||(847942-848008)
chr4 (504-566)||(18576039-18576101)
chr4 (500-560)||(40613441-40613501)
chr4 (498-558)||(49652982-49653042)
[»] chr7 (18 HSPs)
chr7 (146-336)||(24038420-24038609)
chr7 (489-572)||(7328687-7328770)
chr7 (500-575)||(5235977-5236052)
chr7 (512-564)||(8160419-8160471)
chr7 (515-566)||(3721099-3721150)
chr7 (498-572)||(1433443-1433517)
chr7 (500-566)||(22484016-22484082)
chr7 (508-572)||(5233628-5233692)
chr7 (502-566)||(19206043-19206107)
chr7 (501-560)||(17851423-17851482)
chr7 (500-566)||(26733295-26733361)
chr7 (517-571)||(35297669-35297723)
chr7 (489-566)||(20549771-20549848)
chr7 (516-572)||(7758329-7758385)
chr7 (520-572)||(17307904-17307956)
chr7 (500-572)||(27945032-27945104)
chr7 (500-560)||(32308111-32308171)
chr7 (512-572)||(33384578-33384638)
[»] chr5 (11 HSPs)
chr5 (500-572)||(15410444-15410516)
chr5 (512-571)||(36838546-36838605)
chr5 (501-572)||(39205872-39205943)
chr5 (501-566)||(28862297-28862362)
chr5 (512-560)||(12264837-12264885)
chr5 (500-560)||(27144454-27144514)
chr5 (512-572)||(3966506-3966566)
chr5 (515-571)||(6471886-6471942)
chr5 (500-560)||(7175027-7175087)
chr5 (498-566)||(28588676-28588744)
chr5 (501-557)||(35017029-35017085)
[»] chr3 (7 HSPs)
chr3 (496-572)||(8039831-8039907)
chr3 (515-572)||(11313796-11313853)
chr3 (498-566)||(8383246-8383314)
chr3 (512-560)||(49505162-49505210)
chr3 (498-560)||(32804548-32804610)
chr3 (512-572)||(16192746-16192806)
chr3 (508-572)||(25948883-25948947)
[»] chr6 (19 HSPs)
chr6 (501-572)||(7086787-7086858)
chr6 (503-566)||(24614404-24614467)
chr6 (500-552)||(5000642-5000694)
chr6 (500-560)||(13851727-13851787)
chr6 (500-560)||(19040343-19040403)
chr6 (489-553)||(25038086-25038150)
chr6 (516-571)||(9195751-9195806)
chr6 (500-566)||(5732512-5732578)
chr6 (512-566)||(7265595-7265649)
chr6 (501-555)||(7625114-7625168)
chr6 (496-566)||(9629370-9629440)
chr6 (516-566)||(20518352-20518402)
chr6 (515-572)||(9025490-9025547)
chr6 (517-566)||(14721249-14721298)
chr6 (500-572)||(7723246-7723318)
chr6 (501-572)||(8805570-8805639)
chr6 (500-572)||(9027169-9027241)
chr6 (512-572)||(10888970-10889030)
chr6 (500-572)||(15443686-15443758)
[»] chr8 (5 HSPs)
chr8 (501-560)||(34897077-34897136)
chr8 (501-559)||(39954288-39954346)
chr8 (501-566)||(13844598-13844663)
chr8 (515-560)||(14731718-14731763)
chr8 (498-558)||(29776025-29776085)
[»] chr1 (17 HSPs)
chr1 (512-566)||(28674803-28674857)
chr1 (501-566)||(22907341-22907406)
chr1 (512-572)||(6427353-6427413)
chr1 (508-566)||(27471568-27471626)
chr1 (516-562)||(35999328-35999374)
chr1 (500-566)||(36878452-36878518)
chr1 (507-553)||(37055871-37055917)
chr1 (512-566)||(41877472-41877526)
chr1 (517-566)||(373055-373104)
chr1 (501-566)||(21530681-21530746)
chr1 (515-560)||(34712391-34712436)
chr1 (517-566)||(39130769-39130818)
chr1 (500-560)||(17831539-17831599)
chr1 (500-572)||(20157346-20157418)
chr1 (498-566)||(23636051-23636119)
chr1 (515-566)||(29229467-29229519)
chr1 (496-556)||(34257922-34257982)
[»] chr2 (7 HSPs)
chr2 (498-555)||(23921242-23921299)
chr2 (501-560)||(21616754-21616813)
chr2 (512-566)||(31018593-31018647)
chr2 (517-566)||(2415325-2415374)
chr2 (517-566)||(40361756-40361805)
chr2 (510-566)||(34691807-34691863)
chr2 (510-566)||(34714219-34714275)
[»] scaffold0722 (1 HSPs)
scaffold0722 (504-566)||(7034-7096)
[»] scaffold0697 (1 HSPs)
scaffold0697 (501-566)||(1636-1701)
[»] scaffold0044 (1 HSPs)
scaffold0044 (500-565)||(53171-53236)
[»] scaffold0004 (1 HSPs)
scaffold0004 (500-553)||(92798-92851)
[»] scaffold0024 (1 HSPs)
scaffold0024 (512-560)||(68250-68298)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 5833120 - 5832782
Alignment:
Q  15 caaaggaagtgtgtagtttctcagtagcttcatcagggaagagatgtttattggagactcagaaaggtgttaatggtgaaattgagtatcaatgtagaac 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5833120 caaaggaagtgtgtactttctcagtagcttcatcagggaagagatgtttgttggagactcagaaaggtgtcaatggtgaaattgagtatcaatgtagaac 5833021  T
Q  115 atctgaagttatagtggagagaatttcagagtacatagagacagatcaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5833020 atctgaagttatagtggagagaatttcagagtacatagagacagatcaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgat 5832921  T
Q  215 gctttctttgagccacaattcactggcaagctttgctcaccagcttgttacaaaaagtgccctaacattgttgaccttttcttcaatatggctgctggag 314  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5832920 gctttctttgagccacaattcaccggcaaactttgctcaccagcttgttacaaaaagtgccctaacattgttgaccttttcttcaatatggctgctggag 5832821  T
Q  315 agggtaagaatattgttcatttttaatcttacactatca 353  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5832820 agggtaagaatattgttcatttttaatcttacactatca 5832782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 5828635 - 5828943
Alignment:
Q  15 caaaggaagtgtgtagtttctcagtagcttcatcagggaagagatgtttattggagactcagaaaggtgttaatggtgaaattgagtatcaatgtagaac 114  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||| ||||   | | ||||||||||  |||||||||||  ||||    
T  5828635 caaaggaagtgtgtgctttctcagtagcttcatcaggaaagagatgtttgttggagactgagaagaatatcaatggtgaaaccgagtatcaatgccgaac 5828734  T
Q  115 atctgaagttatagtggagagaatttcagagtacatagagacagatcaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgat 214  Q
    |||||||||||| |||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828735 atctgaagttatggtggagagaatagcagcatacatagagacagatcaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgat 5828834  T
Q  215 gctttctttgagccacaattcactggcaagctttgctcaccagcttgttacaaaaagtgccctaacattgttgaccttttcttcaatatggctgctggag 314  Q
    ||||||||||||||  | |||||  |||||||||| || ||| |||||| |   ||||| || || ||||||||||||||||| ||| ||||||||||||    
T  5828835 gctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttctttaatttggctgctggag 5828934  T
Q  315 agggtaaga 323  Q
    | |||||||    
T  5828935 aaggtaaga 5828943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 5823242 - 5822936
Alignment:
Q  15 caaaggaagtgtgtagtttctcagtagcttcatcagggaagagatgtttattggagactcagaaaggtgttaatggtgaaattgagtatcaatgtagaac 114  Q
    ||||||||||||||  |||||||||||||||||| || ||||||||||| ||||||||| ||||   | | ||||||||||  |||||||||||  ||||    
T  5823242 caaaggaagtgtgtgctttctcagtagcttcatctggaaagagatgtttgttggagactgagaagaatatcaatggtgaaaccgagtatcaatgccgaac 5823143  T
Q  115 atctgaagttatagtggagagaatttcagagtacatagagacagatcaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgat 214  Q
    |||||||||||| |||||||||||  |||  ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5823142 atctgaagttatggtggagagaatagcagcatacatagagacagacgaatgtgtagaagcatgtggtgttgatagaagttctgttggtatttcatctgat 5823043  T
Q  215 gctttctttgagccacaattcactggcaagctttgctcaccagcttgttacaaaaagtgccctaacattgttgaccttttcttcaatatggctgctggag 314  Q
    ||||||||||||||  | |||||  |||||||||| || ||| |||||| |   ||||| || || ||||||||||||||||| ||| ||||||||||||    
T  5823042 gctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttctttaatttggctgctggag 5822943  T
Q  315 agggtaa 321  Q
    | |||||    
T  5822942 aaggtaa 5822936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 574
Target Start/End: Complemental strand, 5832773 - 5832688
Alignment:
Q  489 gacacatatattgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtctg 574  Q
    |||||| | ||| ||||||||| || ||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||||    
T  5832773 gacacaaacattaacacgtcgacactgctaataatttgagaaaatcatatgatttagtatagttatttgtgttggtgtagtgtctg 5832688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 30838205 - 30838273
Alignment:
Q  504 acgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||||| ||||||||||||| ||||||| || ||||||| |||||||| || | ||||| |||||    
T  30838205 acgtcgatactgctaataatttgataaaattatataatttagtgtaattataagtatcggtgtcgtgtc 30838273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 566
Target Start/End: Original strand, 847942 - 848008
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||| |||| ||||||||||||||||||||||| || ||| | |||||||| | |||| |||||    
T  847942 tgacacgccgatgccgctaataatttgagaaaattacataattcactataattacaagtgtcggtgt 848008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 566
Target Start/End: Complemental strand, 18576101 - 18576039
Alignment:
Q  504 acgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||||||| ||| ||||||||||||||| | || |||  || |||||||||||||||||||    
T  18576101 acgtcgatactgctgataatttgagaaaatcacataattcggtgtaattatatgtgttggtgt 18576039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 560
Target Start/End: Original strand, 40613441 - 40613501
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||| ||| |||||||||| ||||||||||| | || ||| ||| |||||||||||||    
T  40613441 tgacacgccgacaccgctaatattttgagaaaatcacataattcagtgtaattatatgtgt 40613501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 558
Target Start/End: Complemental strand, 49653042 - 49652982
Alignment:
Q  498 attgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgt 558  Q
    ||||||||||  ||||  |||||||||| ||||||| |||| ||| |||||||||||||||    
T  49653042 attgacacgtttatactactaataatttaagaaaatcagataattcagtataattatatgt 49652982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 146 - 336
Target Start/End: Complemental strand, 24038609 - 24038420
Alignment:
Q  146 tacatagagacagatcaatgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcactggcaagc 245  Q
    |||||||||||||||||||||||| |||||||||| ||||| || | || ||| || ||||| || ||||| ||  |||||||||||||||| | ||| |    
T  24038609 tacatagagacagatcaatgtgtgaaagcatgtggagttgaaaggaattttgtcggaatttcttccgatgcattgcttgagccacaattcacagccaaac 24038510  T
Q  246 tttgctcaccagcttgttacaaaaagtgccctaacattgttgaccttttcttcaatatggctgctggagagggtaagaatattgttcattt 336  Q
    |||| ||| || |||||||| |||| ||||| || ||||||||||||| ||||||| |||||||||| || |||||| ||||| |||||||    
T  24038509 tttgttcatcatcttgttaccaaaattgccccaatattgttgacctttacttcaatttggctgctggggaaggtaag-atatttttcattt 24038420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 489 - 572
Target Start/End: Complemental strand, 7328770 - 7328687
Alignment:
Q  489 gacacatatattgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||| | ||| |||||||||||| ||||||||||||||||||| | || ||||||| ||||||||||||| ||||| |||||    
T  7328770 gacacagacattaacacgtcgatactgctaataatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcgtgtc 7328687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 500 - 575
Target Start/End: Original strand, 5235977 - 5236052
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtctga 575  Q
    ||||||||||| |||||||||||||| ||||||||| || ||||||| ||||||||| | | ||||| ||||||||    
T  5235977 tgacacgtcgacaccgctaataatttaagaaaattatataatttagtgtaattatatatatcggtgtcgtgtctga 5236052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 564
Target Start/End: Original strand, 8160419 - 8160471
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggt 564  Q
    |||||||||||||| ||||||||| || ||||||| |||||||||||||||||    
T  8160419 accgctaataatttaagaaaattacataatttagtgtaattatatgtgttggt 8160471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 515 - 566
Target Start/End: Original strand, 3721099 - 3721150
Alignment:
Q  515 gctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||||||||||||| | || ||||||||||||||||||||| |||||    
T  3721099 gctaataatttgagaaaatcacataatttagtataattatatgtgtcggtgt 3721150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 572
Target Start/End: Original strand, 1433443 - 1433517
Alignment:
Q  498 attgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    ||||||||| ||| |||| ||||||||||||||||| | || |||| || ||||||||||||| ||||| |||||    
T  1433443 attgacacgccgacaccgttaataatttgagaaaatcacatcatttggtgtaattatatgtgtcggtgtcgtgtc 1433517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 566
Target Start/End: Original strand, 22484016 - 22484082
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||| ||| |||||||||||||| ||||||||  || ||| ||||||||||||||||| |||||    
T  22484016 tgacacgccgacaccgctaataattttagaaaattgcataattcagtataattatatgtgtcggtgt 22484082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 572
Target Start/End: Original strand, 5233628 - 5233692
Alignment:
Q  508 cgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||| | ||||||||||||||||| | || || |||| ||||||||||||||||||| |||||    
T  5233628 cgatacggttaataatttgagaaaatcacataatctagtgtaattatatgtgttggtgttgtgtc 5233692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 566
Target Start/End: Original strand, 19206043 - 19206107
Alignment:
Q  502 acacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||| ||| |||||||||||||||||||||| | || ||| | ||||||||||||||| |||||    
T  19206043 acacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgt 19206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 560
Target Start/End: Original strand, 17851423 - 17851482
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||| ||||||||||||||||||| ||||||| | || ||| ||| |||||||||||||    
T  17851423 gacacatcgataccgctaataattttagaaaatcacataattcagtgtaattatatgtgt 17851482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 566
Target Start/End: Original strand, 26733295 - 26733361
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||||| |||||||||||||||| ||||| | || ||| ||| |||||| |||||| |||||    
T  26733295 tgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaattaaatgtgtcggtgt 26733361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 571
Target Start/End: Complemental strand, 35297723 - 35297669
Alignment:
Q  517 taataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgt 571  Q
    ||||||||||||||||| | || ||| | ||||||||||||||||||||| ||||    
T  35297723 taataatttgagaaaatcacataattcattataattatatgtgttggtgtcgtgt 35297669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 566
Target Start/End: Original strand, 20549771 - 20549848
Alignment:
Q  489 gacacatatattgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||||| | ||||||  ||| |||||||||||||||||||||| |  | ||| ||| ||||||||||||| |||||    
T  20549771 gacacatacactgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgt 20549848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 572
Target Start/End: Original strand, 7758329 - 7758385
Alignment:
Q  516 ctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||||| ||||||||| || ||| ||||||||||| ||||| ||||| |||||    
T  7758329 ctaataattttagaaaattatataattcagtataattatgtgtgtcggtgtcgtgtc 7758385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 17307904 - 17307956
Alignment:
Q  520 taatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||||||||| | || ||| ||| ||||||||||||||||||| |||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgttggtgtcgtgtc 17307956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 27945032 - 27945104
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    ||||||| ||| ||| |||||||||||||||||||| || ||| ||| |||||| | |||| ||||| |||||    
T  27945032 tgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtc 27945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 560
Target Start/End: Original strand, 32308111 - 32308171
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||| ||| |||||||||||||||||||||| | || ||| ||| ||||| |||||||    
T  32308111 tgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgt 32308171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 33384638 - 33384578
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||| ||||||| |||||||||   || ||||||| ||||||||||||||||||| |||||    
T  33384638 accgttaataatctgagaaaatcctataatttagtgtaattatatgtgttggtgtggtgtc 33384578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 500 - 572
Target Start/End: Complemental strand, 15410516 - 15410444
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    ||||||| ||| |||||||||||||| ||||||||| |||||| ||| |||| |||||||||||||| |||||    
T  15410516 tgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaatcatatgtgttggtgttgtgtc 15410444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 571
Target Start/End: Original strand, 36838546 - 36838605
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgt 571  Q
    |||||||||||||||||||||||| || ||||||| ||||||||||||| ||||| ||||    
T  36838546 accgctaataatttgagaaaattacataatttagtgtaattatatgtgtcggtgtcgtgt 36838605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 572
Target Start/End: Original strand, 39205872 - 39205943
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||||| || ||||||||||||||||||| | || |||  || ||||||||||||||||||| |||||    
T  39205872 gacacgtcgacactgctaataatttgagaaaatcatataattaggtgtaattatatgtgttggtgtcgtgtc 39205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 566
Target Start/End: Original strand, 28862297 - 28862362
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||||||||  ||||||||  ||||||| | || |||||||||||||| ||||||||||||    
T  28862297 gacacgtcgataccattaataattgaagaaaatcatataatttagtataattacatgtgttggtgt 28862362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 12264885 - 12264837
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||||| |||||||||||||| |||||| ||| |||||||||||||    
T  12264885 accgctaattatttgagaaaattacatgattcagtgtaattatatgtgt 12264837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 560
Target Start/End: Original strand, 27144454 - 27144514
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||| ||| ||||||||||||||||| |||| | || ||||||| |||||||||||||    
T  27144454 tgacacgccgacaccgctaataatttgaggaaatcacataatttagtgtaattatatgtgt 27144514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 3966506 - 3966566
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||||||||||||||||| | |  ||| ||| ||||||||||||| ||||| |||||    
T  3966506 accgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtc 3966566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 571
Target Start/End: Complemental strand, 6471942 - 6471886
Alignment:
Q  515 gctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgt 571  Q
    ||||||||||||||||||| | || ||| ||| ||||||||||||| ||||| ||||    
T  6471942 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtgggtgtcgtgt 6471886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 560
Target Start/End: Complemental strand, 7175087 - 7175027
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    |||||| |||| |||| ||||||||||||||||| | || |||| | ||||||||||||||    
T  7175087 tgacacatcgacaccgttaataatttgagaaaatcacataatttggcataattatatgtgt 7175027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 28588744 - 28588676
Alignment:
Q  498 attgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||| ||| |||| ||||||||||||||||| | || ||| ||| |||||||| |||| |||||    
T  28588744 attgacacgccgacaccggtaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgt 28588676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 557
Target Start/End: Original strand, 35017029 - 35017085
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatg 557  Q
    |||||| ||| ||| |||||||||||||||||| | || ||||||| ||||||||||    
T  35017029 gacacgccgaaaccactaataatttgagaaaatcacataatttagtgtaattatatg 35017085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 8039907 - 8039831
Alignment:
Q  496 atattgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    ||||||||||| | | |||||||||||||||||||||||| || ||| ||| ||||||||||||| ||||| |||||    
T  8039907 atattgacacgccaacaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtc 8039831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 515 - 572
Target Start/End: Complemental strand, 11313853 - 11313796
Alignment:
Q  515 gctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    ||||||||||||||||||| | || ||||||| |||||||||||||| |||| |||||    
T  11313853 gctaataatttgagaaaatcacataatttagtgtaattatatgtgttagtgtcgtgtc 11313796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 8383246 - 8383314
Alignment:
Q  498 attgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||| ||| |||||||||||||||||||||| | || ||| ||| |||||||| |||| |||||    
T  8383246 attgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgt 8383314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 49505210 - 49505162
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    |||||||||||||||||||||| | || ||||||| |||||||||||||    
T  49505210 accgctaataatttgagaaaatcacataatttagtgtaattatatgtgt 49505162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 560
Target Start/End: Complemental strand, 32804610 - 32804548
Alignment:
Q  498 attgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||| | ||| |||| ||||||||||||||||| | || ||||||| |||||||||||||    
T  32804610 attgacatgccgacaccgttaataatttgagaaaatcacataatttagtgtaattatatgtgt 32804548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 16192806 - 16192746
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||| ||||||||||||||||| | || ||| ||| ||||||||||||||| ||| |||||    
T  16192806 accgttaataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtc 16192746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 25948947 - 25948883
Alignment:
Q  508 cgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||| ||||||||||||| ||||| | || ||| ||| |||||||| |||||||||| |||||    
T  25948947 cgatacggctaataatttgaaaaaatcacataattcagtgtaattataagtgttggtgtcgtgtc 25948883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 572
Target Start/End: Original strand, 7086787 - 7086858
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||||  || ||||||||||||||||||| | || ||||||| ||||||||||||| |||||||||||    
T  7086787 gacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattatatgtgtcggtgtagtgtc 7086858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 503 - 566
Target Start/End: Original strand, 24614404 - 24614467
Alignment:
Q  503 cacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||||||||||||||||| | ||||||| || ||||||| ||||| |||||||||||||    
T  24614404 cacgtcgataccgctaataatttaaaaaaattatataatttagtgtaattgtatgtgttggtgt 24614467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 552
Target Start/End: Complemental strand, 5000694 - 5000642
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataatt 552  Q
    ||||||||||| ||||||||||||| |||||||| | |||||| |||||||||    
T  5000694 tgacacgtcgacaccgctaataattcgagaaaatcacatgattcagtataatt 5000642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 560
Target Start/End: Original strand, 13851727 - 13851787
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||||||| |||||||||||||||||||||| |  | ||| ||| |||||||||||||    
T  13851727 tgacacgtcgacaccgctaataatttgagaaaataacgtaattcagtgtaattatatgtgt 13851787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 560
Target Start/End: Original strand, 19040343 - 19040403
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||| ||| |||||||||||||||||||||| | || ||| ||| |||||||||||||    
T  19040343 tgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgt 19040403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 553
Target Start/End: Complemental strand, 25038150 - 25038086
Alignment:
Q  489 gacacatatattgacacgtcgataccgctaataatttgagaaaattagatgatttagtataatta 553  Q
    |||||| ||| |||||||| || |||| ||||||||||||||||||| || ||||||| ||||||    
T  25038150 gacacagatactgacacgttgacaccgttaataatttgagaaaattacataatttagtgtaatta 25038086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 571
Target Start/End: Complemental strand, 9195806 - 9195751
Alignment:
Q  516 ctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgt 571  Q
    |||||||||||||||||| | || ||||||| ||||||||||||| ||||| ||||    
T  9195806 ctaataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgt 9195751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 566
Target Start/End: Complemental strand, 5732578 - 5732512
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||| ||| |||| ||||||||||||||||| | ||  |||||| ||||||||||||| |||||    
T  5732578 tgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattatatgtgtcggtgt 5732512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 566
Target Start/End: Complemental strand, 7265649 - 7265595
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||||||||||||||||||| | || ||| ||| ||||||||||||| |||||    
T  7265649 accgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 7265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 555
Target Start/End: Original strand, 7625114 - 7625168
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattata 555  Q
    |||||||||| || | ||||||||||||||||| | || ||||||||||||||||    
T  7625114 gacacgtcgacacggataataatttgagaaaatgatataatttagtataattata 7625168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 566
Target Start/End: Original strand, 9629370 - 9629440
Alignment:
Q  496 atattgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||||| ||| ||||| |||||||||||||||| | || ||| | | ||||||||||||| |||||    
T  9629370 atattgacacgccgacaccgccaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 566
Target Start/End: Original strand, 20518352 - 20518402
Alignment:
Q  516 ctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||| ||||||||||||||| || | | |||||||||||||||||||||||    
T  20518352 ctaacaatttgagaaaattacataaatcagtataattatatgtgttggtgt 20518402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 572
Target Start/End: Complemental strand, 9025547 - 9025490
Alignment:
Q  515 gctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    ||||||||||||||||||| | || ||| ||| ||||||||||||| ||||| |||||    
T  9025547 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 9025490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 14721249 - 14721298
Alignment:
Q  517 taataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||| ||||||||| || ||| | |||||||||||||||||||||    
T  14721249 taataatttaagaaaattacataattcactataattatatgtgttggtgt 14721298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 572
Target Start/End: Complemental strand, 7723318 - 7723246
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||| || || ||||||||||||||||||| | || ||| || |||||||||||| | ||||| |||||    
T  7723318 tgacacgtggacactgctaataatttgagaaaatcatataattcagcataattatatgtatcggtgtcgtgtc 7723246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 572
Target Start/End: Complemental strand, 8805639 - 8805570
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||||  || ||||||||||||||||||| | || ||||||| ||||  ||||||| |||||||||||    
T  8805639 gacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaat--tatgtgtcggtgtagtgtc 8805570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 9027169 - 9027241
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    ||||||| ||| |||||||||||||||||| ||| | || |||  || ||||||||||||| ||||| |||||    
T  9027169 tgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatatgtgtcggtgtcgtgtc 9027241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 10889030 - 10888970
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||||||||||| ||||| | || ||||||| | |||||||||||| |||| |||||    
T  10889030 accgctaataatttgataaaatcacataatttagtgtgattatatgtgttagtgtcgtgtc 10888970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 15443686 - 15443758
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    ||||||||||| | |  ||||||||||||||||| | || ||| | ||||||||||| ||||||||| |||||    
T  15443686 tgacacgtcgacatcaataataatttgagaaaataacataattcaatataattatatatgttggtgttgtgtc 15443758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 560
Target Start/End: Original strand, 34897077 - 34897136
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    |||||||||| |||||||||||||||||||||| | || ||| ||| |||||||||||||    
T  34897077 gacacgtcgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgt 34897136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 559
Target Start/End: Complemental strand, 39954346 - 39954288
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtg 559  Q
    |||||| ||| |||||||||||||||||||||| | || ||||||| ||||||||||||    
T  39954346 gacacgccgacaccgctaataatttgagaaaatcacataatttagtgtaattatatgtg 39954288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 566
Target Start/End: Complemental strand, 13844663 - 13844598
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||| ||| || ||||||||||||||||||| | || ||| ||| ||||||||||||| |||||    
T  13844663 gacacgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgt 13844598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 14731718 - 14731763
Alignment:
Q  515 gctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||||||||||||||| | || ||||||| |||||||||||||    
T  14731718 gctaataatttgagaaaatcacataatttagtgtaattatatgtgt 14731763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 558
Target Start/End: Original strand, 29776025 - 29776085
Alignment:
Q  498 attgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgt 558  Q
    ||||||| ||||| || ||||||||||||||||||| |  | ||| |||||||||||||||    
T  29776025 attgacaagtcgacactgctaataatttgagaaaatcacgtaattcagtataattatatgt 29776085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 566
Target Start/End: Original strand, 28674803 - 28674857
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||| ||||||||||||||||||| || ||| ||||||||||||| |||||||||    
T  28674803 accgttaataatttgagaaaattacataattcagtataattatatatgttggtgt 28674857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 566
Target Start/End: Complemental strand, 22907406 - 22907341
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||||  ||| ||||||||||||||||||| || |||| ||||||||||| |||| |||||    
T  22907406 gacacgtcgacgccgttaataatttgagaaaattatataatttggtataattataagtgtcggtgt 22907341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 6427353 - 6427413
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||||||||||||||||||| | || ||| | | ||||||||||||||||||| |||||    
T  6427353 accgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 566
Target Start/End: Complemental strand, 27471626 - 27471568
Alignment:
Q  508 cgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||||||||||||||||||||||  | || ||| ||| |||||| ||||||||||||    
T  27471626 cgataccgctaataatttgagaaaagcacataattcagtgtaattacatgtgttggtgt 27471568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 562
Target Start/End: Complemental strand, 35999374 - 35999328
Alignment:
Q  516 ctaataatttgagaaaattagatgatttagtataattatatgtgttg 562  Q
    |||||||||| ||||||| | || |||||||||||||||||||||||    
T  35999374 ctaataatttaagaaaatcatataatttagtataattatatgtgttg 35999328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 566
Target Start/End: Original strand, 36878452 - 36878518
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||| ||| |||||||||||||||||||||| | || ||| ||| |||||||| |||| |||||    
T  36878452 tgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgt 36878518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 553
Target Start/End: Complemental strand, 37055917 - 37055871
Alignment:
Q  507 tcgataccgctaataatttgagaaaattagatgatttagtataatta 553  Q
    ||||||| ||||||||||||||||||||| || ||||||| ||||||    
T  37055917 tcgatactgctaataatttgagaaaattacataatttagtgtaatta 37055871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 566
Target Start/End: Complemental strand, 41877526 - 41877472
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||||||||||||||||||||| || ||||||| |||||| | |||| |||||    
T  41877526 accgctaataatttgagaaaattacataatttagtgtaattacaagtgtcggtgt 41877472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 373055 - 373104
Alignment:
Q  517 taataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||||||||||| | |||||||||| |||| |||||||| |||||    
T  373055 taataatttgagaaaatgacatgatttagtttaatcatatgtgtcggtgt 373104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 566
Target Start/End: Original strand, 21530681 - 21530746
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||| ||| |||| ||||||||||||||||| | || |||| ||||||||||| |||| |||||    
T  21530681 gacacgccgacaccgttaataatttgagaaaatcatataatttggtataattataagtgtcggtgt 21530746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 560
Target Start/End: Complemental strand, 34712436 - 34712391
Alignment:
Q  515 gctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||||||||||||||| | || ||||||| |||||||||||||    
T  34712436 gctaataatttgagaaaataacataatttagtgtaattatatgtgt 34712391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Complemental strand, 39130818 - 39130769
Alignment:
Q  517 taataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||| ||||||||| || ||||||| ||||||||||||| |||||    
T  39130818 taataattttagaaaattatataatttagtgtaattatatgtgtcggtgt 39130769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 560
Target Start/End: Complemental strand, 17831599 - 17831539
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    ||||||| ||| |||||||||||||||||||||| | || ||| ||| |||| ||||||||    
T  17831599 tgacacgccgacaccgctaataatttgagaaaatcacattattcagtgtaatcatatgtgt 17831539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 572
Target Start/End: Complemental strand, 20157418 - 20157346
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgtagtgtc 572  Q
    |||||| |||| |||||||||||| ||||||||| | || ||| ||| |||| |||||||| ||||| |||||    
T  20157418 tgacacatcgacaccgctaataatgtgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtc 20157346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 566
Target Start/End: Complemental strand, 23636119 - 23636051
Alignment:
Q  498 attgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||| ||| ||||| || ||||||||||||||| || ||| ||| ||||| ||||||| |||||    
T  23636119 attgacacgccgaaaccgccaaaaatttgagaaaattacataattcagtgtaattgtatgtgtcggtgt 23636051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 566
Target Start/End: Original strand, 29229467 - 29229519
Alignment:
Q  515 gctaataatttgagaaaattagatgatttagt-ataattatatgtgttggtgt 566  Q
    ||||||||||||||||||| | ||||||||||  ||||||||||||| |||||    
T  29229467 gctaataatttgagaaaatcacatgatttagtggtaattatatgtgtcggtgt 29229519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 556
Target Start/End: Complemental strand, 34257982 - 34257922
Alignment:
Q  496 atattgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatat 556  Q
    ||||||||||||||| |||| ||||||||| | ||||| | || ||||||| |||||||||    
T  34257982 atattgacacgtcgacaccgttaataatttaataaaatcacataatttagtgtaattatat 34257922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 555
Target Start/End: Original strand, 23921242 - 23921299
Alignment:
Q  498 attgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattata 555  Q
    ||||||| |||||||||| ||||||||||||||||||| || ||| ||| ||||||||    
T  23921242 attgacaggtcgataccgttaataatttgagaaaattacataattcagtgtaattata 23921299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 560
Target Start/End: Original strand, 21616754 - 21616813
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    |||||| ||| |||||||||||||||||||||| | || ||| ||| |||||||||||||    
T  21616754 gacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 566
Target Start/End: Original strand, 31018593 - 31018647
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||||||||||| ||||||| | |||||||||| |||||||| |||| |||||    
T  31018593 accgctaataatttcagaaaatcacatgatttagtgtaattataggtgtcggtgt 31018647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 2415325 - 2415374
Alignment:
Q  517 taataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||||||||||||| || ||| ||| ||| |||||||||||||||    
T  2415325 taataatttgagaaaattatataattaagtgtaactatatgtgttggtgt 2415374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Complemental strand, 40361805 - 40361756
Alignment:
Q  517 taataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  40361805 taataatttgaaaaaattacataatttagtgtaattatatctgttggtgt 40361756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 566
Target Start/End: Complemental strand, 34691863 - 34691807
Alignment:
Q  510 ataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||||||||||||||| ||||| | || ||| ||| ||||||||||||| |||||    
T  34691863 ataccgctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgt 34691807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 566
Target Start/End: Complemental strand, 34714275 - 34714219
Alignment:
Q  510 ataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||||||||||||||| ||||| | || ||| ||| ||||||||||||| |||||    
T  34714275 ataccgctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgt 34714219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 566
Target Start/End: Complemental strand, 7096 - 7034
Alignment:
Q  504 acgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    ||||||| || ||||||||||||| ||||||| || |||||||||||||| | |||| |||||    
T  7096 acgtcgacacagctaataatttgaaaaaattacataatttagtataattacaagtgtaggtgt 7034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 566
Target Start/End: Original strand, 1636 - 1701
Alignment:
Q  501 gacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtgt 566  Q
    |||||| ||| |||| ||||||||||||||||| | || |||| ||||||||||| |||| |||||    
T  1636 gacacgccgacaccgttaataatttgagaaaatcatataatttggtataattataagtgtcggtgt 1701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 565
Target Start/End: Original strand, 53171 - 53236
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataattatatgtgttggtg 565  Q
    ||||||| ||||||||| |||||||||||||||| | || ||| ||| |||||||| |||| ||||    
T  53171 tgacacgccgataccgccaataatttgagaaaatcacataattcagtgtaattataagtgtcggtg 53236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 92798 - 92851
Alignment:
Q  500 tgacacgtcgataccgctaataatttgagaaaattagatgatttagtataatta 553  Q
    ||||||| ||| |||||||||||||||||||||||| || ||| ||| ||||||    
T  92798 tgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaatta 92851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 68298 - 68250
Alignment:
Q  512 accgctaataatttgagaaaattagatgatttagtataattatatgtgt 560  Q
    |||| ||||||||||||||||| | || |||||||||||||||| ||||    
T  68298 accgttaataatttgagaaaatcatataatttagtataattataggtgt 68250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University