View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14369_high_2 (Length: 554)
Name: NF14369_high_2
Description: NF14369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14369_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 12 - 536
Target Start/End: Original strand, 8926500 - 8927024
Alignment:
| Q |
12 |
aagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgccatcttccttcttctaatatttcagagatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926500 |
aagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgccatcttccttcttctaatatttcagagatc |
8926599 |
T |
|
| Q |
112 |
ccagatcttgatgaagattacaggtcacatattttaatgttttgttaaaatatatatttagtatttaattcatatacaccatcagcgtnnnnnnnnttac |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
8926600 |
ccagatcttgatgaagattacaggtcacatattttaatgttttgttaaaatatatatttagtatttaattcatatacactgtcagcgtaaaaaaaattac |
8926699 |
T |
|
| Q |
212 |
tattataattatttctaaagtcacacatataaaatcatatacttaaactcatatatttatatctttgtgaatttcaggaagacaatgaaggaatttgcag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926700 |
tattataattatttctaaagtcacacatataaaatcatatacttaaactcatatatttatatctttgtgaatttcaggaagacaatgaaggaatttgcag |
8926799 |
T |
|
| Q |
312 |
agaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggtacttgaagaaagtgttttatggatcaaaggg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926800 |
agaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttggacttgagaaagggtacttgaagaaagtgttttatggatcaaaggg |
8926899 |
T |
|
| Q |
412 |
tccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagatgctggtggcatcatcctt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8926900 |
tccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcacacacagatgctggtggcatcatcctt |
8926999 |
T |
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| Q |
512 |
ctcttccaagatgacaaagtcagtg |
536 |
Q |
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| T |
8927000 |
ctcttccaagatgacaaagtcagtg |
8927024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 414 - 528
Target Start/End: Original strand, 55527991 - 55528105
Alignment:
| Q |
414 |
caaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagatgctggtggcatcatccttct |
513 |
Q |
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|||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||| || | || |
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| T |
55527991 |
caaattttggaaccaaagttagcaactaccctccttgtcctaagccagatcttatcaaaggactcagagcccatacagatgctggtggcataattttact |
55528090 |
T |
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| Q |
514 |
cttccaagatgacaa |
528 |
Q |
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| T |
55528091 |
cttccaagatgacaa |
55528105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 55523247 - 55523373
Alignment:
| Q |
12 |
aagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgccatcttccttcttctaatatttcagagatc |
111 |
Q |
| |
|
|||||||||||| |||| || |||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||| | ||| || ||||||||| |
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| T |
55523247 |
aagcaaaggtttagagtttgctcagtctgaaattaatgacttggattgggaaagcactttctttttgcgccaccttcctaactttaacatatcagagatc |
55523346 |
T |
|
| Q |
112 |
ccagatcttgatgaagattacaggtca |
138 |
Q |
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|| ||||||||| | || ||||||||| |
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| T |
55523347 |
cctgatcttgatcatgactacaggtca |
55523373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 281 - 423
Target Start/End: Original strand, 55523582 - 55523724
Alignment:
| Q |
281 |
aatttcaggaagacaatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggt |
380 |
Q |
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||||| ||||||| ||||||||||||||||| | || | ||||| ||||| ||| |||||||||||| ||||||||||||||| || |||||||| | |
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| T |
55523582 |
aattttaggaagataatgaaggaatttgcagtggaacttgagaacctggctgagctacttcttgactttctgtgtgagaatcttgggctagagaaaggtt |
55523681 |
T |
|
| Q |
381 |
acttgaagaaagtgttttatggatcaaagggtccaaattttgg |
423 |
Q |
| |
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| ||||||||||| ||| ||||||| ||||| ||||||||||| |
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| T |
55523682 |
atttgaagaaagtctttcatggatccaagggaccaaattttgg |
55523724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 294 - 536
Target Start/End: Original strand, 37629326 - 37629568
Alignment:
| Q |
294 |
caatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggtacttgaagaaagt |
393 |
Q |
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|||||||||||||||| ||| | |||| ||| |||||||| || || |||||||| ||||| ||||||| ||| || || |||||| | || || | |
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| T |
37629326 |
caatgaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaaggc |
37629425 |
T |
|
| Q |
394 |
gttttatggatcaaagggtccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagat |
493 |
Q |
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|| |||||||||||||| |||| |||||| || || ||| ||||||||||| || || || || || || | ||||| || | || ||||| ||| |
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| T |
37629426 |
tttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccgat |
37629525 |
T |
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| Q |
494 |
gctggtggcatcatccttctcttccaagatgacaaagtcagtg |
536 |
Q |
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|| ||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
37629526 |
gccggtggaatcatccttcttttccaagatgacaaggtcagtg |
37629568 |
T |
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