View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14369_low_8 (Length: 294)
Name: NF14369_low_8
Description: NF14369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14369_low_8 |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (7 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 6611385 - 6611104
Alignment:
| Q |
1 |
ccctttgtcccattttaataatcgttttaagttttgcgcagttcttnnnnnnntagttagtttagttgatttcaatgataaaattagagtcttagatagg |
100 |
Q |
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| T |
6611385 |
ccctctgtcccattttaataatcgttttaagttttgcgcagttcttacaaaaataattagtttagttgatttcaatgataaaattagagtcttagatagg |
6611286 |
T |
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| Q |
101 |
tggcgcagttgctaaattaatgatctctgacaattgtattgttcattaattacttggtagaataggcagttcgattgttggtaaagactaaaataaattt |
200 |
Q |
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| T |
6611285 |
tggtgtagttggtaaattaatgatctctgacaattgtat------------acttggtagaacaggcagttcgattgttggtaaagactaaaataaattt |
6611198 |
T |
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| Q |
201 |
gaacacaatgaacttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcagagttggagcaaaacctagc |
294 |
Q |
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| T |
6611197 |
gaacacaatgaacttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcagagttggagcaaaacctagc |
6611104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 294
Target Start/End: Complemental strand, 17293060 - 17292872
Alignment:
| Q |
107 |
agttgctaa-attaatgatctctgacaattgtattgttcattaattacttggtagaataggcagttcgattgttggtaaagactaaaataaatttgaaca |
205 |
Q |
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| T |
17293060 |
agttgctaatatgaatgatctttaacaattgtatcgttcatgaattactatgtagcacaggcgcttcgattgttggtaagtactgggataaatttgaagg |
17292961 |
T |
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| Q |
206 |
caatgaacttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcagagttggagcaaaacctagc |
294 |
Q |
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| T |
17292960 |
cgaagaatttggagaacaaaacagcattagacattgccgccactctagagaacaagagtatcttatttagtgctggatcaaaacctagc |
17292872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 14727421 - 14727596
Alignment:
| Q |
119 |
aatgatctctgacaattgtattgttcattaattacttggtagaataggcagttcgattgttggtaaagactaaaataaatttgaacacaatgaacttgga |
218 |
Q |
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|||||| ||| |||| |||| ||||||||||||||||||||| | ||||| ||| ||||||||||| ||| ||||||||||| || ||| ||||| |
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| T |
14727421 |
aatgatttctaacaaatgtactgttcattaattacttggtagcacaggcacttcaattgttggtaagtactggtataaatttgaaggaaaagaatttgga |
14727520 |
T |
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| Q |
219 |
gagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcagagttggagcaaaacctagc |
294 |
Q |
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| T |
14727521 |
gaacaaaacagcattagacataacaagcaccccagagatgaagagtatattattaagtgttggagcaaaacatagc |
14727596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 15329583 - 15329681
Alignment:
| Q |
177 |
gttggtaaagactaaaataaatttgaacacaatgaacttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcag |
275 |
Q |
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| T |
15329583 |
gttggtaaagactaaaataaatttgcacaaaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcag |
15329681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 15509952 - 15510050
Alignment:
| Q |
177 |
gttggtaaagactaaaataaatttgaacacaatgaacttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcag |
275 |
Q |
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| T |
15509952 |
gttggtaaagactaaaataaatttgcacaaaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcag |
15510050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 29552461 - 29552589
Alignment:
| Q |
119 |
aatgatctctgacaattgtattgttcattaattactt---ggtagaataggcagttcgattgttggtaaagactaaaataaatttgaacacaatgaactt |
215 |
Q |
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|||||||||| ||||||| |||||||||| |||| | |||| | |||||||||||||||||||||| ||||||||||||||||| |||| |||||| |
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| T |
29552461 |
aatgatctctaacaattgcattgttcattgattattaatcggtatgacaggcagttcgattgttggtaaatactaaaataaatttgaagacaaagaactt |
29552560 |
T |
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| Q |
216 |
ggagagcaaaacagcattagacatagcaa |
244 |
Q |
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| T |
29552561 |
tgaggacaaaacagcattagacgtagcaa |
29552589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 28865680 - 28865793
Alignment:
| Q |
177 |
gttggtaaagactaaaataaatttgaacacaatgaacttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcaga |
276 |
Q |
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||||||||||||||||||||||||| || || ||| ||||||| ||||||||||| ||||||||||||| |||| ||| |||||||| |||||||| |
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| T |
28865680 |
gttggtaaagactaaaataaatttgcgcaaaaagaatttggagaataaaacagcattggacatagcaagcattccagagattaagagtatattattcagt |
28865779 |
T |
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| Q |
277 |
gttggagcaaaacc |
290 |
Q |
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| T |
28865780 |
gctggatcaaaacc |
28865793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 30648656 - 30648733
Alignment:
| Q |
217 |
gagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcagagttggagcaaaacctagc |
294 |
Q |
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| T |
30648656 |
gagaacaaaaccgcattagacatagcaagcacgccagagatcaagagtatattattaagtgttggaacaaaacctagc |
30648733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 26089017 - 26089096
Alignment:
| Q |
215 |
tggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcagagttggagcaaaacctagc |
294 |
Q |
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|||||| |||||| |||||||||||||||||||||||| | |||||||| ||||| || ||||||||||||||||| |
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| T |
26089017 |
tggagaacaaaaccgcattagacatagcaagcactccagatgtgaagagtatattattaagttttggagcaaaacctagc |
26089096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 26086733 - 26086653
Alignment:
| Q |
214 |
ttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcagagttggagcaaaacctagc |
294 |
Q |
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| T |
26086733 |
ttggagaacaaaacagcattagacatagcaagcactccaaagatcaagagtatattattaagggcaggagcaaaatctagc |
26086653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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