View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_high_15 (Length: 249)
Name: NF1436_high_15
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 22324068 - 22323847
Alignment:
| Q |
13 |
aatattggataaaatcgaataaaaccacaatgagacacaactaaaaaagtgttgcattaagaagaagaa---cgacaaaacaatgtctcaatcaaacgac |
109 |
Q |
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| T |
22324068 |
aatattggatagaatcgaacaaaaccacaatgagacacaac-aaaaaagtgctgcattaagaagaagaagaacgacaaaacaatgtctcaatcaaacgac |
22323970 |
T |
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| Q |
110 |
gaaattatgaaagaaaaacaatcacttatttaaagaaaaaggaaggaataatgatttagatgagcaattttgaatgaaaaattagtcttaaatcatcttt |
209 |
Q |
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| T |
22323969 |
gaaattatgaaagaaaaacaatcacttatttaaagaaaaaggaaggaatgatgatttagatgagcaattttgaatgaaaaattagtcttaaatcatcttt |
22323870 |
T |
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| Q |
210 |
ctcacgtggatgaagaagaaaag |
232 |
Q |
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| T |
22323869 |
ctcacgtggatgaagtagaaaag |
22323847 |
T |
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