View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_high_19 (Length: 238)
Name: NF1436_high_19
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45192015 - 45192236
Alignment:
| Q |
1 |
ttcatactacacctatagatagcaacacaaattcatatgctattcaacatgcaaatgaaattgacagaaattatgataacctacatggtgttacaagtga |
100 |
Q |
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| T |
45192015 |
ttcatgctacacctatagatagcaacacaaattcatatgctattcaacatgcaaatgaaattgacagaaattatgataacctacatggtgttacaagtga |
45192114 |
T |
|
| Q |
101 |
tgagtctgatagcacaactcctaattctgatttgttttctctgattggtaatttccaaggaaggtgaagttggagataggaaaaactattaggtttagag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45192115 |
tgagtctgatagcacaactcctaattctgatttgttttctctgattggtaatttccaaggaaggtgaagttggagataggaaatactattaggtttagag |
45192214 |
T |
|
| Q |
201 |
gttaaatattacaccttgtttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
45192215 |
gttaaatattacaccttgtttc |
45192236 |
T |
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