View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_high_2 (Length: 575)
Name: NF1436_high_2
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 356 - 556
Target Start/End: Complemental strand, 51449459 - 51449253
Alignment:
| Q |
356 |
aactccaacagcatcacaaatatctaagacatacaaattaaaccaaccaaaggaccacataagaataccaccatttacacactaccatat----caattc |
451 |
Q |
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| T |
51449459 |
aactccaacaacatcacaaatatctaagacggacaaattaaaccatccaaaggacgacataagaataccaccatttacacaccaccatatcaatcaattg |
51449360 |
T |
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| Q |
452 |
attcaaaattctaaaactaccctaatgtgatcaccatgatttaaagtcaattcaagtcataattaaaa--acacccctaattaaaataaacagaaccacc |
549 |
Q |
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| T |
51449359 |
attcaaaattgtaaaactaccctactgtgatcatcatcattttaagtcaattcaagtcatgattaaaaacacacccctaattaaaataaacagcaccacc |
51449260 |
T |
|
| Q |
550 |
acatgac |
556 |
Q |
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||||||| |
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| T |
51449259 |
acatgac |
51449253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 378 - 556
Target Start/End: Complemental strand, 31454689 - 31454508
Alignment:
| Q |
378 |
tctaagacatacaaattaaaccaaccaaaggaccacataagaataccaccatttacacactaccatatcaattcattcaaaattctaaaactaccctaat |
477 |
Q |
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| T |
31454689 |
tctaagacagacaaattaaaccaaccaaaggaccacataagaatagcaccatttacacactacaataccaattcattcaaaattctaaaactaccctact |
31454590 |
T |
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| Q |
478 |
gtgatcaccatgatttaaagtcaattcaagtcataattaaaa---acacccctaattaaaataaacagaaccaccacatgac |
556 |
Q |
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| T |
31454589 |
ttgatcaccatgatttcaagttaattcaagtcataataaaaaaacacactcctaattaaaataaacagcaccgccacatgac |
31454508 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 31455036 - 31454912
Alignment:
| Q |
14 |
aatatacataaactaagcatctgcatctacttcataaccgaccaaaaaattgtgttacaattttagttacagctaatatagctgcagacacatgtaagta |
113 |
Q |
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| T |
31455036 |
aatatacataaactaagcatctgcatctacttcataaccgaccaaaaaattgtgttacaattttagttacagctgatatagctgcagacacatgtaagta |
31454937 |
T |
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| Q |
114 |
ccatcgtacctacagccaagttttt |
138 |
Q |
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|||| ||||||||||||||| |||| |
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| T |
31454936 |
ccattgtacctacagccaaggtttt |
31454912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 31454865 - 31454808
Alignment:
| Q |
171 |
tactttttaatccatattaattttcttcatcatcttgcctaagttttgtacgcagtaa |
228 |
Q |
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|
| T |
31454865 |
tactttttaatccatattaattatcttcatcatcttgcccaagttttgtatgcagtaa |
31454808 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 409 - 548
Target Start/End: Original strand, 9279526 - 9279667
Alignment:
| Q |
409 |
accacataagaataccaccatttacacactaccatatcaattcattcaaaattctaaaactaccctaatgtgatcaccatgatttaaagtcaattcaagt |
508 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || |||| |||||||| ||||| |
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| T |
9279526 |
accacataagaatttcaccatttacacactaccatataaattcattcaaaattctaaaactaccctactgtgatcactatcatttcaagtcaatccaagt |
9279625 |
T |
|
| Q |
509 |
cataattaaaa--acacccctaattaaaataaacagaaccac |
548 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||| ||||| |
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| T |
9279626 |
cataataaaaaacacacccctaattaaaataaacagcaccac |
9279667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 427 - 541
Target Start/End: Complemental strand, 9279478 - 9279362
Alignment:
| Q |
427 |
catttacacactaccatatcaattcattcaaaattctaaaactaccctaatgtgatcaccatgatttaaagtcaattcaagtcataattaaaaaca---c |
523 |
Q |
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| T |
9279478 |
catttacacactaccatataaattc-ttcaaaattataaaactaccctacggtgatcaccattatttcaaatcaattcaagtcataataaaaaacatacc |
9279380 |
T |
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| Q |
524 |
ccctaattaaaataaaca |
541 |
Q |
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||||||||||||||||| |
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| T |
9279379 |
tcctaattaaaataaaca |
9279362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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