View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_high_4 (Length: 476)
Name: NF1436_high_4
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 283615 - 283165
Alignment:
| Q |
18 |
ttaatctctcttatatatttgtcttttttgtgcagtggatgactgcagggaggggaattattcactctgaaatgcctgcagaagcaaaaaacaatggact |
117 |
Q |
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| T |
283615 |
ttaatctctcttatatatttgtcttttttgtgcagtggatgactgcagggaggggaattattcactctgaaatgcctgcagaagcaaaaaacaatggact |
283516 |
T |
|
| Q |
118 |
gcaattgtggatcaatttagcagctaatgacaaaatgtaatgtgatatttatgtatttttaattattttattggttcgaagtagattttaccaataacta |
217 |
Q |
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| T |
283515 |
gcaattgtggatcaatttagcatctaatgacaaaatgtaatgtgatatttatgtatttttaattattttattggttcgaagtagattttaccaataacta |
283416 |
T |
|
| Q |
218 |
atctttgttgaagaatctggctaatcaattttagtgcggtctccccttccaactacannnnnnncattcacaaaactcaaactcgagaccttatttaaga |
317 |
Q |
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| T |
283415 |
atctttgttgaagaatctggctaatcaattttagtgcggtctccccttccaaccacatttttttcattcacaaaactcaaactcgagaccttatttaaga |
283316 |
T |
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| Q |
318 |
attctaaatctagtttcacttgaaccaatgtaatgtaatactatatagtgtgaggttaaataatttaaannnnnnnnnnnnaatctatgttctcatattt |
417 |
Q |
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| T |
283315 |
attctaaatctagtttcacttgaaccaatgtaatgtaatactatatagtgtgaggttaaataatttaaattttttgtttttaatctatgttctcatattt |
283216 |
T |
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| Q |
418 |
agtcttacaaattacaaaactgcatatatttagtctttttcaattcttctc |
468 |
Q |
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| T |
283215 |
agtcttacaaattacaaaactgcatatatttagtctttttcaattcttctc |
283165 |
T |
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