View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_high_5 (Length: 443)
Name: NF1436_high_5
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 43 - 427
Target Start/End: Complemental strand, 31342603 - 31342218
Alignment:
| Q |
43 |
tgcaatgtggtttttgctttcatggttacagtaatagattgttttaaattggcatagatgaatggatattaatgttgttgtgaaagataatgcaattgat |
142 |
Q |
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| T |
31342603 |
tgcaatgtggtttttgctttcatggttacagtaatagattgttttaaattggaatagatgaatggatattaatgttgttgtgaaagataatgcaattgat |
31342504 |
T |
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| Q |
143 |
attgtgttggcctttagagttatatgcattggctgatgtgatgatcaatgaaattggtgagtttggtatcatttttgggtctgg-aacaataaaataatt |
241 |
Q |
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| T |
31342503 |
attgtgttggcctttagagttatatgcattggctgatgtgatgatcaatgaaattggtgagtttggtatcatttttgggtctggaaacaataaaacaatt |
31342404 |
T |
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| Q |
242 |
gttactatgtgcactgctatttggaattaatttataagaattgtgttttcttgtgcttagatgaaagaagacttattggttagggagttgccttctttat |
341 |
Q |
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| T |
31342403 |
gttactatgtgcactgctatttggaattaatttataagaattgtgttttcttgtgcttaggtgttagaagacttattggttagggagttgccttctttat |
31342304 |
T |
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| Q |
342 |
ttttaggcactttgatttgtgcagtggctgtggttcatccaagatcaccctagagattttaaagagaacaaaaataataatcatag |
427 |
Q |
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| T |
31342303 |
ttttaggcactttgatttgtgcagtggctgtggttcatccaagatcaccctagagattttaaagaggacaaaaataataatcatag |
31342218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 49416481 - 49416558
Alignment:
| Q |
89 |
aattggcatagatgaatggatattaatgttgttgtgaaagataatgcaattgatattgtgttggcctttagagttatatg |
168 |
Q |
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| T |
49416481 |
aattggtatagatgaatggatgtataccttgttgtgaaggatcatgcaattgac--tgtcttggcctttagagttatatg |
49416558 |
T |
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