View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1436_low_1 (Length: 834)

Name: NF1436_low_1
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1436_low_1
NF1436_low_1
[»] chr7 (23 HSPs)
chr7 (431-816)||(38917487-38917887)
chr7 (10-376)||(38917075-38917432)
chr7 (30-107)||(26199509-26199587)
chr7 (28-109)||(43215182-43215264)
chr7 (30-107)||(22760863-22760941)
chr7 (30-122)||(39499703-39499795)
chr7 (30-109)||(26459406-26459486)
chr7 (35-122)||(41519247-41519335)
chr7 (30-104)||(24513797-24513872)
chr7 (29-110)||(17041007-17041089)
chr7 (30-107)||(20335829-20335907)
chr7 (29-125)||(23552117-23552215)
chr7 (36-107)||(21877814-21877886)
chr7 (30-108)||(23301599-23301678)
chr7 (29-122)||(23945860-23945955)
chr7 (71-121)||(7309398-7309448)
chr7 (36-70)||(42477104-42477138)
chr7 (47-107)||(7499922-7499983)
chr7 (30-102)||(7801180-7801253)
chr7 (29-109)||(14058252-14058333)
chr7 (29-109)||(14368280-14368361)
chr7 (28-69)||(24621813-24621854)
chr7 (29-109)||(45709704-45709785)
[»] chr5 (10 HSPs)
chr5 (30-109)||(16773807-16773887)
chr5 (29-109)||(26078047-26078128)
chr5 (29-105)||(30109308-30109385)
chr5 (29-120)||(30883182-30883275)
chr5 (29-109)||(34984805-34984886)
chr5 (29-108)||(43241679-43241759)
chr5 (29-120)||(16436617-16436708)
chr5 (29-99)||(40461619-40461690)
chr5 (50-100)||(19949621-19949671)
chr5 (30-67)||(3252328-3252365)
[»] chr3 (19 HSPs)
chr3 (30-122)||(14186648-14186741)
chr3 (31-107)||(47454615-47454692)
chr3 (28-107)||(5499405-5499485)
chr3 (30-109)||(37788461-37788541)
chr3 (29-107)||(8368797-8368876)
chr3 (29-122)||(36720380-36720475)
chr3 (29-108)||(19154630-19154710)
chr3 (71-122)||(52769965-52770017)
chr3 (30-108)||(2597217-2597296)
chr3 (29-122)||(32651420-32651514)
chr3 (28-109)||(10499105-10499187)
chr3 (41-109)||(4844507-4844576)
chr3 (41-109)||(4870203-4870272)
chr3 (29-105)||(8051213-8051290)
chr3 (30-109)||(10445135-10445216)
chr3 (32-84)||(10682964-10683017)
chr3 (50-110)||(21960571-21960632)
chr3 (29-58)||(24481580-24481609)
chr3 (33-109)||(53412948-53413025)
[»] chr2 (17 HSPs)
chr2 (29-108)||(35710390-35710470)
chr2 (27-109)||(3001376-3001459)
chr2 (30-105)||(12994376-12994452)
chr2 (30-109)||(19244109-19244189)
chr2 (29-109)||(4060210-4060291)
chr2 (29-121)||(29503270-29503363)
chr2 (30-109)||(40416386-40416466)
chr2 (29-107)||(37480074-37480153)
chr2 (29-107)||(39714991-39715070)
chr2 (30-108)||(42327392-42327471)
chr2 (70-122)||(33582014-33582067)
chr2 (30-66)||(5147719-5147755)
chr2 (30-105)||(42860348-42860424)
chr2 (41-107)||(21213780-21213847)
chr2 (30-104)||(28846691-28846766)
chr2 (29-109)||(19322767-19322848)
chr2 (29-105)||(34041588-34041665)
[»] chr8 (10 HSPs)
chr8 (32-122)||(3624582-3624673)
chr8 (30-109)||(968362-968442)
chr8 (29-119)||(19703472-19703564)
chr8 (29-107)||(16852339-16852418)
chr8 (30-109)||(18540298-18540378)
chr8 (29-109)||(8484998-8485079)
chr8 (28-84)||(17727447-17727504)
chr8 (41-107)||(18546360-18546427)
chr8 (27-104)||(34966851-34966929)
chr8 (29-109)||(35641897-35641978)
[»] chr6 (10 HSPs)
chr6 (28-109)||(33549102-33549184)
chr6 (41-122)||(3715463-3715546)
chr6 (50-107)||(346551-346608)
chr6 (29-122)||(12234489-12234584)
chr6 (30-120)||(14557962-14558053)
chr6 (33-109)||(4105051-4105131)
chr6 (30-64)||(22995153-22995187)
chr6 (30-64)||(23793213-23793247)
chr6 (30-103)||(32439805-32439879)
chr6 (29-109)||(12188299-12188380)
[»] scaffold0258 (1 HSPs)
scaffold0258 (30-109)||(15319-15399)
[»] chr1 (20 HSPs)
chr1 (34-109)||(9224779-9224855)
chr1 (34-109)||(14787332-14787408)
chr1 (27-109)||(51814491-51814574)
chr1 (30-121)||(2219972-2220065)
chr1 (28-107)||(25297770-25297850)
chr1 (303-370)||(16138143-16138210)
chr1 (34-122)||(17745238-17745328)
chr1 (30-122)||(50901581-50901675)
chr1 (29-70)||(34460945-34460986)
chr1 (303-370)||(16127053-16127120)
chr1 (300-367)||(33731163-33731230)
chr1 (30-80)||(38978967-38979018)
chr1 (30-107)||(19528325-19528403)
chr1 (27-100)||(29817672-29817746)
chr1 (29-106)||(40257398-40257476)
chr1 (48-109)||(50919972-50920034)
chr1 (50-107)||(52029935-52029993)
chr1 (29-109)||(8177178-8177259)
chr1 (30-121)||(11068826-11068919)
chr1 (29-109)||(36371469-36371550)
[»] chr4 (16 HSPs)
chr4 (30-122)||(47044717-47044810)
chr4 (30-109)||(37109347-37109427)
chr4 (29-122)||(21660126-21660221)
chr4 (29-122)||(21668890-21668985)
chr4 (30-122)||(46545711-46545805)
chr4 (34-106)||(13901746-13901819)
chr4 (51-107)||(19112929-19112986)
chr4 (33-109)||(52254400-52254477)
chr4 (30-108)||(3780657-3780736)
chr4 (29-122)||(7949436-7949531)
chr4 (34-108)||(43623441-43623516)
chr4 (37-109)||(306306-306379)
chr4 (33-109)||(7292794-7292871)
chr4 (30-107)||(19229206-19229283)
chr4 (70-122)||(47386773-47386826)
chr4 (30-121)||(51948480-51948573)
[»] scaffold0118 (1 HSPs)
scaffold0118 (30-109)||(41629-41709)
[»] scaffold0211 (1 HSPs)
scaffold0211 (30-109)||(24053-24133)
[»] scaffold0006 (1 HSPs)
scaffold0006 (41-122)||(162991-163074)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 431 - 816
Target Start/End: Original strand, 38917487 - 38917887
Alignment:
Q  431 gttggactttcatgtcgacgcctccaaatcagaccaagacaccaaacaagaacaacatcatgaggatgataggccacagtgttctagtgacatgtcatca 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38917487 gttggactttcatgtcgacgcctccaaatcagaccaagacaccaaacaagaacaacatcatgaggatgataggccacaatgttctagtgacatgtcatca 38917586  T
Q  531 cataataatagtagcattgctacttcaaataatgataatgatat------------caacaa---caacaataatcatgatgctgttgattcggcagaaa 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||            ||| ||   |||||||||| |||||| |||||||||||||||||    
T  38917587 cataataatagtagcattgctacttcaaataatgataatgatatatctataagttacaataatatcaacaataataatgatgttgttgattcggcagaaa 38917686  T
Q  616 ataattttgcattggatgatgatttttggtgtgatgttttgtcatctgataattctagcattgagacaagtggtgttatggacattggtgttgataatta 715  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917687 ataattttgcattggatgatgatttttggtgtgaagttttgtcatccgataattctagcattgagacaagtggtgttatggacattggtgttgataatta 38917786  T
Q  716 tcaatttcaagctccattaggaactgaagaaggagtttttgattctagttcattgagtttatgccaagatatggacttctggcacgatgtttatgcgaga 815  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38917787 tcaatttcaagctccattaggaactgaagaaggagtttttgattctagttcattgagtttatgccaagatatggacttctggcatgatgtttatgcgaga 38917886  T
Q  816 g 816  Q
    |    
T  38917887 g 38917887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 38917075 - 38917432
Alignment:
Q  10 aataatattaggtcaggtaaaacccacttgagttggtctagtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||| |||||| |||||||||| ||    
T  38917075 aataatattaggtcaggtgaaacccacttgagttggtctagtggtattaacttgagacttagaatgtgcttctccttgaagtctcaagttcgattctttc 38917174  T
Q  110 agtgtcaatttagcttattcnnnnnnntattaggtcgggtgaaagaaacttatgtaaaataaaaatgnnnnnnngtctaattttggttaacttagttaat 209  Q
    ||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||         ||    
T  38917175 agtgtcaatttagcttattcaaaaaaatattaggtcggatgaaagaaacttatgtaaaataaaaatgtttttttgtctaattttggtta---------at 38917265  T
Q  210 gaatattacaaaatcaagcatgaatatatatcatgatttcgttgtgcaaacatttatttaatggtttaatgatgatgcagatggtcaactattgcagcaa 309  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917266 gaatattacaaaatcaagcatgaatatagagcatgattttgttgtgcaaatatttatttaatggtttaatgatgatgcagatggtcaactattgcagcaa 38917365  T
Q  310 gattacccggacgaacagataacgagataaaaaatgtatggcacacccatttgaagaaaaggctgcc 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917366 gattacccggacgaacagataacgagataaaaaatgtatggcacacccatttgaagaaaaggctgcc 38917432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 26199509 - 26199587
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||||||||||| |||||||||||| |||| ||||| ||| ||| || ||||||||| |||||||||||||||||    
T  26199509 aacccacttgagttggcctagtggtattggcttgggacctgagaatgtactcctctttgagatctcaggttcgattctc 26199587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 43215182 - 43215264
Alignment:
Q  28 aaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||||| |||||||||||||||||| |||| |||||  ||||||||| ||| |  ||||||||||||||||||||||    
T  43215182 aaaacccacttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctc 43215264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 22760863 - 22760941
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||||| |||||||| |||||||||||||| |||||  ||||||||| ||| |  ||||||||||||||||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 22760941  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 39499795 - 39499703
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 122  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||| | |||||| |||||||| |||||||||| || ||||||||||||    
T  39499795 aacccacttgggttggcctagtggtattggcttgggacctgtgagtgtgttcctctttaaggtctcatgttcgattctttc-gtgtcaatttag 39499703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 26459486 - 26459406
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| |  ||||||||||||||||||||||    
T  26459486 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 26459406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 41519335 - 41519247
Alignment:
Q  35 acttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 122  Q
    ||||| ||||| ||||||||||||||||| ||  ||| |||||||| ||| |  |||||||||||||| ||||||| ||||||||||||    
T  41519335 acttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtctcaggttcgcttctctctgtgtcaatttag 41519247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 24513797 - 24513872
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgatt 104  Q
    |||||||||| ||||| |||||||||||| |||||||  | | ||||| |||||| ||||||||||||||||||||    
T  24513797 aacccacttgggttggcctagtggtattggcttgagatttgggagtgtacttctccttgaggtctcaggttcgatt 24513872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 17041089 - 17041007
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctaga-gtgtgcttctctttgaggtctcaggttcgattctctca 110  Q
    ||||||||||| ||||||||||||| |||| |||| || || || ||||||| ||| |  |||||||||||||||||||||||    
T  17041089 aaacccacttgggttggtctagtggcattggcttgggatctggaagtgtgctcctcctcaaggtctcaggttcgattctctca 17041007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 20335907 - 20335829
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||||| |||||||||| ||||||| |||| ||| | | |||||||| ||| | |||||||||||||||||||||    
T  20335907 aacccacttgggttggtctagaggtattggcttgggacttgggagtgtgctcctcctcgaggtctcaggttcgattctc 20335829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 23552117 - 23552215
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttagctt 125  Q
    ||||||||||| ||||| |||||| |||||||||| |||||  ||||||||| ||| |  |||||||| ||||||||||||| | || |||||||||||    
T  23552117 aaacccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctcaagttcgattctctctaatgccaatttagctt 23552215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 21877814 - 21877886
Alignment:
Q  36 cttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||||| ||||||||||||||||| |||||  ||| ||||| ||| || |||||||| |||||||||||    
T  21877814 cttgagttggcctagtggtattgacttgggacctgggagggtgctcctccttaaggtctcacgttcgattctc 21877886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 23301678 - 23301599
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct 108  Q
    |||||||||| ||||| || |||||||||||||| ||| | | |||||||| ||| ||||||||||| ||| ||||||||    
T  23301678 aacccacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctccttgaggtctcaagtttgattctct 23301599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 23945860 - 23945955
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 122  Q
    ||||||||||| ||||  ||| ||||||||||||   |||| ||| |||||| ||| ||||||||||||||||||| ||||| | |||||||||||    
T  23945860 aaacccacttgggttgacctaatggtattgacttagaacctgagaatgtgctcctcattgaggtctcaggttcgatcctctctaatgtcaatttag 23945955  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 7309398 - 7309448
Alignment:
Q  71 gagtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaattta 121  Q
    ||||||||| ||| | ||||||||| ||||||||||||| |||||||||||    
T  7309398 gagtgtgctcctcctcgaggtctcaagttcgattctctccgtgtcaattta 7309448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 42477138 - 42477104
Alignment:
Q  36 cttgagttggtctagtggtattgacttgagaccta 70  Q
    |||| ||||||||||||||||||||||||||||||    
T  42477138 cttgggttggtctagtggtattgacttgagaccta 42477104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 7499983 - 7499922
Alignment:
Q  47 ctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||| ||||| |||| ||||| ||||| |||| ||||| |||||||||||||||||||||    
T  7499983 ctagtgatattggcttgggacctgagagtttgctcctcttcgaggtctcaggttcgattctc 7499922  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 7801180 - 7801253
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcga 102  Q
    ||||||||||  |||| || |||||||||||||| |||||  ||||||||| |||||  |||||||||||||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtctcaggttcga 7801253  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 14058252 - 14058333
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||| |||||||||| || ||||||||| ||||  |||| ||||||||||  || |  ||||||||||||||||||||||    
T  14058252 aaacccgcttgagttggcctggtggtattgtcttggaacctgagagtgtgctcatcctcaaggtctcaggttcgattctctc 14058333  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 14368280 - 14368361
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||| |||||||||| || ||||||||| ||||  |||| ||||||||||  || |  ||||||||||||||||||||||    
T  14368280 aaacccgcttgagttggcctggtggtattgtcttggaacctgagagtgtgctcatcctcaaggtctcaggttcgattctctc 14368361  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 24621813 - 24621854
Alignment:
Q  28 aaaacccacttgagttggtctagtggtattgacttgagacct 69  Q
    |||||||| |||||||||| ||||| ||||||||||||||||    
T  24621813 aaaacccatttgagttggtttagtgatattgacttgagacct 24621854  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 45709785 - 45709704
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||| ||| ||||| |||||||||||  |||| || || |||||||||| ||| | |||||||||||||||||| ||||    
T  45709785 aaacccatttgggttggcctagtggtattagcttgggatctgagagtgtgctcctcctcgaggtctcaggttcgattatctc 45709704  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 16773807 - 16773887
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||||||||||| |||||||||||||| |||||  ||||||||| ||| | |||||||||||||||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 16773887  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 26078128 - 26078047
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||| ||||| ||||||||||||  ||| ||| | | ||| ||||||||||  ||||||||||||||||||||||    
T  26078128 aaacccacttgggttggcctagtggtattggtttgggacttgggagtatgcttctcttcaaggtctcaggttcgattctctc 26078047  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 30109385 - 30109308
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattc 105  Q
    ||||||||||| |||||  | ||||||||| |||| ||||| | |||||||| ||| |||||||||||||||||||||    
T  30109385 aaacccacttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctccttgaggtctcaggttcgattc 30109308  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 30883275 - 30883182
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc-tcagtgtcaattt 120  Q
    ||||||||||| |||||||||||||||||| |||| |||||  ||||||||| ||| |  |||||||| |||| ||||||  ||||||||||||    
T  30883275 aaacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttcaattctcaccagtgtcaattt 30883182  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 34984805 - 34984886
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||| |||||||||||||||||| ||||  ||||  ||||||||| ||| |  |||||| |||||||||||||||    
T  34984805 aaacccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcgattctctc 34984886  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 43241759 - 43241679
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgaga-cctagagtgtgcttctctttgaggtctcaggttcgattctct 108  Q
    |||| |||||| ||||||||||||||||||||||| || | | ||||||||   || |||||||||||||||| |||||||    
T  43241759 aaactcacttgggttggtctagtggtattgacttgggatcttggagtgtgcccttccttgaggtctcaggttcaattctct 43241679  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 16436617 - 16436708
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaattt 120  Q
    |||| |||||| ||||| |||||||||||| |||| ||| | ||||||||| ||| |  |||||||| |||||||| || |||| |||||||    
T  16436617 aaactcacttgggttggcctagtggtattggcttgggacttggagtgtgctcctcctcaaggtctcatgttcgattttcacagtatcaattt 16436708  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 40461690 - 40461619
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggtt 99  Q
    ||||||||||| |||| ||| |||||||| ||||||||| | |||||||||||||| |  ||||||||||||    
T  40461690 aaacccacttgggttgatctggtggtattaacttgagacttgagagtgtgcttctcctcaaggtctcaggtt 40461619  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 19949671 - 19949621
Alignment:
Q  50 gtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttc 100  Q
    ||||||||||||||||| |||||||||||| ||| | ||| ||||||||||    
T  19949671 gtggtattgacttgagatctagagtgtgctcctcctcgagctctcaggttc 19949621  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 3252365 - 3252328
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagac 67  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  3252365 aacccacttgggttggcctagtggtattgacttgagac 3252328  T

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Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 14186648 - 14186741
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaatttag 122  Q
    |||||||||| ||||| |||||||||||| |||| ||||| ||||||||| ||| |  ||||||||||||||||||||| | ||||||||||||    
T  14186648 aacccacttgggttggcctagtggtattgtcttgggacctggagtgtgctcctcctcaaggtctcaggttcgattctctccggtgtcaatttag 14186741  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 47454692 - 47454615
Alignment:
Q  31 acccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    ||||||||| |||| ||||||||||||| ||||||| || | |||||||| ||| | |||||||||||||||||||||    
T  47454692 acccacttgggttgttctagtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctc 47454615  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 5499485 - 5499405
Alignment:
Q  28 aaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||||||| ||||| || ||||||||||||||||| || |||||||||| ||| || |||||| |||||| ||||||    
T  5499485 aaaacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctccttaaggtctaaggttctattctc 5499405  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 37788541 - 37788461
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| ||||| | |||||||||||||||  |||||| |||||||| ||| |  ||||||||||||||||||||||    
T  37788541 aacccacttgggttggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcgattctctc 37788461  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 8368876 - 8368797
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    ||||||| ||||||||| |||||||||||||||||| |||| | ||||||||  || | ||||||||||||| |||||||    
T  8368876 aaacccaattgagttggcctagtggtattgacttgaaacctggtagtgtgctcatcctcgaggtctcaggtttgattctc 8368797  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 36720380 - 36720475
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 122  Q
    ||||||||||| |||||||| ||||||||| |||| ||  |  ||||||||| ||| | ||||| ||||||||||||||||| |||||||||||||    
T  36720380 aaacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggtttcaggttcgattctctctagtgtcaatttag 36720475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 19154630 - 19154710
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct 108  Q
    ||||||| ||| ||||| ||||| |||||| |||||| ||| |||||||||| ||| |  |||||||||||||||||||||    
T  19154630 aaacccatttgggttggcctagttgtattggcttgaggcctgagagtgtgctcctcctaaaggtctcaggttcgattctct 19154710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 52770017 - 52769965
Alignment:
Q  71 gagtgtgcttctctttgaggtctcaggttcgattctc-tcagtgtcaatttag 122  Q
    ||||||||| ||| ||||||||||||||||||||||| | |||||||||||||    
T  52770017 gagtgtgctcctccttgaggtctcaggttcgattctctttagtgtcaatttag 52769965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 2597296 - 2597217
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct 108  Q
    |||||||||| |||||||| ||||||||| |||  ||  ||| |||||||| ||| |||||||||||||||||| |||||    
T  2597296 aacccacttgggttggtctggtggtattggcttcggatttaggagtgtgctcctccttgaggtctcaggttcgaatctct 2597217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 32651514 - 32651420
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 122  Q
    |||||||||| |||||| |||||||||||| |||| |||||  ||||||||| ||| |  || |||||| |||||||||||| |||||||||||||    
T  32651514 aaacccactt-agttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcgattctctctagtgtcaatttag 32651420  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 10499187 - 10499105
Alignment:
Q  28 aaaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||||| ||||| || ||||||||| |||| || || | ||| ||||  || |||||||||||||||||||||||||    
T  10499187 aaaacccacttgggttggcctggtggtattggcttgggatctgggagtctgctcttccttgaggtctcaggttcgattctctc 10499105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 4844576 - 4844507
Alignment:
Q  41 gttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||| |||||||||||||| || || | |||||||| ||| | ||||||||||| |||||||||||    
T  4844576 gttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctc 4844507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 4870272 - 4870203
Alignment:
Q  41 gttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||| |||||||||||||| || || | |||||||| ||| | ||||||||||| |||||||||||    
T  4870272 gttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctc 4870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 8051213 - 8051290
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattc 105  Q
    ||||||||||| ||||| || ||||||||| |||| ||||| | ||| |||||||| | ||||||||| |||||||||    
T  8051213 aaacccacttgggttggcctggtggtattggcttgggacctggcagtatgcttctcctcgaggtctcaagttcgattc 8051290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 10445216 - 10445135
Alignment:
Q  30 aacccacttgagttggtctagtggta-ttgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| ||||| ||||||| | ||| |||| ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  10445216 aacccacttgggttggcctagtggcaattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 10445135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 10683017 - 10682964
Alignment:
Q  32 cccacttgagttggtctagtggtattgacttgagacc-tagagtgtgcttctct 84  Q
    |||||||| |||| ||||||||||||| ||||||||| | ||||||||||||||    
T  10683017 cccacttgggttgatctagtggtattggcttgagaccttggagtgtgcttctct 10682964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 21960571 - 21960632
Alignment:
Q  50 gtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctca 110  Q
    ||||||||| |||| ||||| |||||||||| ||| | |||||||||| |||||||||||||    
T  21960571 gtggtattggcttgggacctgagagtgtgctcctcctcgaggtctcagattcgattctctca 21960632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 24481580 - 24481609
Alignment:
Q  29 aaacccacttgagttggtctagtggtattg 58  Q
    ||||||||||||||||||||||||||||||    
T  24481580 aaacccacttgagttggtctagtggtattg 24481609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 53412948 - 53413025
Alignment:
Q  33 ccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||| |||||||||||||||||| ||||  ||||  ||||||||| ||| |  ||||||||||||| ||||||||    
T  53412948 ccacttgggttggtctagtggtattggcttgtaacctgggagtgtgctcctcctcaaggtctcaggttcaattctctc 53413025  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 35710390 - 35710470
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctct 108  Q
    |||||||||||||||| ||| |||| ||||||||||||| || ||||||| | ||||||||||||||| ||||||||||||    
T  35710390 aaacccacttgagttgatctggtgggattgacttgagacttaggagtgtgttcctctttgaggtctcatgttcgattctct 35710470  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 3001376 - 3001459
Alignment:
Q  27 taaaacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||| ||||||||| ||| ||||| |||||||||||||| ||||    
T  3001376 taaaactcacttgggttggcctagtggtattgacttgagatctaggagtgtgctcctccttgagatctcaggttcgattatctc 3001459  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 12994452 - 12994376
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattc 105  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||||||| ||| || |||||||| |||||||||    
T  12994452 aacccgcttgagttggtctagtggtattgacttgggacctgggagtgtgctcctccttaaggtctcaagttcgattc 12994376  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 19244109 - 19244189
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| ||||||||| ||||||||||||| ||||| |||||||||| |||    ||||||||||||||||||||||    
T  19244109 aacccacttgggttggtctactggtattgacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctc 19244189  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 4060291 - 4060210
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||| ||||| ||||||||||||  |||| |||| |||||||||||||| |  || |||||||||||||||||||    
T  4060291 aaacccacttgggttggcctagtggtattggtttgaaacctgagagtgtgcttctcctcaagatctcaggttcgattctctc 4060210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 29503270 - 29503363
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaattta 121  Q
    ||||||||||| ||||| ||||||||||||  ||| ||||| | |||||||| ||| |  |||||||||||||||||||| | |||||||||||    
T  29503270 aaacccacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcccggtgtcaattta 29503363  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 40416466 - 40416386
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| ||||| |||||||||||||||||  ||||  |||| |||| ||| || ||||||||||||||||||||||    
T  40416466 aacccacttgggttggcctagtggtattgacttggaacctgggagtatgctcctccttaaggtctcaggttcgattctctc 40416386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 37480074 - 37480153
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    ||||||||||| ||||| || ||||||||| |||| ||||| |||||||||| ||| |  ||||||||||||||||||||    
T  37480074 aaacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctc 37480153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 39714991 - 39715070
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    ||||||||||| |||||  | |||||||||||||| ||||| | |||||||| ||| | |||||||||||||||||||||    
T  39714991 aaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 39715070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 42327471 - 42327392
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct 108  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| |  |||||||||||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctct 42327392  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 33582014 - 33582067
Alignment:
Q  70 agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 122  Q
    |||||||||| ||| ||||||||||||||||||||||||| | |||||||||||    
T  33582014 agagtgtgctcctccttgaggtctcaggttcgattctctctaatgtcaatttag 33582067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5147755 - 5147719
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgaga 66  Q
    |||||||||| ||||||||||||||||||||||||||    
T  5147755 aacccacttgggttggtctagtggtattgacttgaga 5147719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 42860348 - 42860424
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattc 105  Q
    |||| ||||||||||| || ||| ||||||||||||||||  ||||||||| ||| | ||||||||| |||||||||    
T  42860348 aacctacttgagttggcctggtgatattgacttgagacctgggagtgtgctcctcctcgaggtctcaagttcgattc 42860424  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 21213780 - 21213847
Alignment:
Q  41 gttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||| ||||||||| |||| ||||| | |||||| | ||| |||||||||||||||||||||||    
T  21213780 gttggtctggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctc 21213847  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 28846691 - 28846766
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgatt 104  Q
    |||||||||  |||| |||||||||||||||||| |||||  ||||||||| ||| | || |||||||||||||||    
T  28846691 aacccacttaggttgatctagtggtattgacttgggacctgggagtgtgctcctcctcgatgtctcaggttcgatt 28846766  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 19322767 - 19322848
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||| |||| |||||||||||||  ||| |||||  ||||||||| |||||  ||||||| |||| |||||||||    
T  19322767 aaacccacttgggttgatctagtggtattggtttgggacctgggagtgtgctcctcttcaaggtctctggtttgattctctc 19322848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 34041665 - 34041588
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattc 105  Q
    ||||||||||| ||||| ||||||||||||||||  || || |||||||||| ||| |  |||||||||||| |||||    
T  34041665 aaacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtttgattc 34041588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 3624582 - 3624673
Alignment:
Q  32 cccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 122  Q
    |||||||| ||||| |||||||||||| |||| ||||| | |||||||| |||||  |||||||||||||||||||||| | ||||||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctctccgggtcaatttag 3624673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 968362 - 968442
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||||||||| || ||||||||| |||| ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 968442  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 19703564 - 19703472
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatt 119  Q
    ||||||||||| ||||| |||||||||||| |||| ||||| |||||||||| ||| |  |||||||||||||||||||| | ||||||||||    
T  19703564 aaacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccctagtgtcaatt 19703472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 16852339 - 16852418
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    ||||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| | |||||||||||||||||||||    
T  16852339 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 16852418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 18540298 - 18540378
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| ||||| |||||||||||| |||| |||||  |||||| |||||| |  ||||||||||||||||||||||    
T  18540298 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctctc 18540378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 8484998 - 8485079
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||| ||||| || ||||||||  |||| |||||  ||||||||| |||||||||||||||  ||||||||||||    
T  8484998 aaacccacttgggttggcctggtggtatttgcttgggacctgtgagtgtgctcctctttgaggtctcattttcgattctctc 8485079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 17727504 - 17727447
Alignment:
Q  28 aaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctct 84  Q
    |||||||||||| |||||||| ||||| |||||||||||||| |||||||||| ||||    
T  17727504 aaaacccacttgggttggtctcgtggtgttgacttgagacctcagagtgtgctcctct 17727447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 18546427 - 18546360
Alignment:
Q  41 gttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    ||||||||||||||||||| ||| ||||| ||||  |||| ||| | |||||||||||||||||||||    
T  18546427 gttggtctagtggtattgatttgggacctgagagcatgctcctcctcgaggtctcaggttcgattctc 18546360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 34966929 - 34966851
Alignment:
Q  27 taaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgatt 104  Q
    ||||| ||||||||||||||||  |||||||| |||||||| |  ||||||||| ||||| ||||||||| ||| ||||    
T  34966929 taaaatccacttgagttggtctgatggtattggcttgagacttgggagtgtgctactcttcgaggtctcaagtttgatt 34966851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 35641978 - 35641897
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||| |||||||| ||||||| | |||||||  | | |||||||| ||| | || ||||||||||||||||||||    
T  35641978 aaacccacttgggttggtctggtggtatcggcttgagatttgggagtgtgctcctcctcgatgtctcaggttcgattctctc 35641897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 33549102 - 33549184
Alignment:
Q  28 aaaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||||| |||||||| ||||||||| |||| ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  33549102 aaaacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 33549184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 3715463 - 3715546
Alignment:
Q  41 gttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaatttag 122  Q
    ||||| |||||||||||||||||||| || | ||| |||||||| | ||||||||| |||||||||||| ||||||||||||||    
T  3715463 gttgggctagtggtattgacttgagatctgggagtatgcttctcgtcgaggtctcaagttcgattctctccagtgtcaatttag 3715546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 346551 - 346608
Alignment:
Q  50 gtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||||||||| ||||| ||||||||||||| | ||||||||| |||||||||||    
T  346551 gtggtattgacttgggacctggagtgtgcttctcctcgaggtctcatgttcgattctc 346608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 12234584 - 12234489
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaatttag 122  Q
    ||||||||||  ||||| || |||||||||||||| ||||| | |||||||| |   | |||||||||||||||||||||| ||||||||||||||    
T  12234584 aaacccacttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctctccagtgtcaatttag 12234489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 14557962 - 14558053
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctaga-gtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaattt 120  Q
    |||||||||| |||||||| ||||| ||| |||| ||||| || ||||||| ||| |   ||||||||||||||||||| | ||||||||||    
T  14557962 aacccacttgggttggtctggtggtgttggcttgggacctggaagtgtgctcctcctccgggtctcaggttcgattctcccggtgtcaattt 14558053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 4105051 - 4105131
Alignment:
Q  33 ccacttgagttggtctagtgg---tattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||||||||||||||   ||||| ||||| ||||| ||||||||| ||| || || |||||||||||||| ||||    
T  4105051 ccacttgagttggtctagtggtattattggcttgaaacctaggagtgtgctcctccttaagatctcaggttcgattttctc 4105131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 22995187 - 22995153
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttga 64  Q
    ||||||||||||||||||| |||||||||||||||    
T  22995187 aacccacttgagttggtctggtggtattgacttga 22995153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 23793213 - 23793247
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttga 64  Q
    ||||||||||||||||||| |||||||||||||||    
T  23793213 aacccacttgagttggtctggtggtattgacttga 23793247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 32439805 - 32439879
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgat 103  Q
    ||||||||||||||||| |  || ||||||||||  |||| | |||||||||||||| ||||||||| |||||||    
T  32439805 aacccacttgagttggtatgatgatattgacttggaacctgaaagtgtgcttctcttcgaggtctcaagttcgat 32439879  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 12188380 - 12188299
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| |  |||| ||| |||||||||||||    
T  12188380 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagttcgattctctc 12188299  T

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Target: scaffold0258 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 15399 - 15319
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| |||||||| ||||||||| |||| ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 15319  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 9224779 - 9224855
Alignment:
Q  34 cacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||| |||||||| |||||||||  |||||| || ||||| |||||||| |||||||||||||||||||||||||    
T  9224779 cacttgggttggtctggtggtattgctttgagatctgagagtatgcttctccttgaggtctcaggttcgattctctc 9224855  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 14787408 - 14787332
Alignment:
Q  34 cacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||||  ||||||||||||||||||||||| |||||||| ||||| |  |||| |||||||||||||||||    
T  14787408 cacttgagttgacctagtggtattgacttgagacctgagagtgtgtttctcctcaaggtgtcaggttcgattctctc 14787332  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 51814491 - 51814574
Alignment:
Q  27 taaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||||| ||||| ||  |||||||||||||||| || |||||||||| ||| |  ||||||||||||||||||||||    
T  51814491 taaaacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctc 51814574  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 2219972 - 2220065
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaattta 121  Q
    |||||||||| |||| ||| ||||||||| ||||  |||| | |||||||||||| | |||||||||||||||||||||| || ||||||||||    
T  2219972 aacccacttgggttgttctggtggtattggcttggaacctgaaagtgtgcttctcctcgaggtctcaggttcgattctctccaatgtcaattta 2220065  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 25297770 - 25297850
Alignment:
Q  28 aaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||||||| ||||||||||||||||||||||  || || |||||||||| ||| | ||||||| ||||| |||||||    
T  25297770 aaaacccacttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctcgaggtctgaggtttgattctc 25297850  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 16138210 - 16138143
Alignment:
Q  303 gcagcaagattacccggacgaacagataacgagataaaaaatgtatggcacacccatttgaagaaaag 370  Q
    ||||||| |||||| ||| ||||||| || || |||||||||||||||||||| || |||||||||||    
T  16138210 gcagcaaaattacctggaagaacagacaatgaaataaaaaatgtatggcacactcacttgaagaaaag 16138143  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 17745328 - 17745238
Alignment:
Q  34 cacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 122  Q
    |||||| ||||| |||||||||||| |||| ||||| || ||||||| ||| | ||||||||| |||||||||||||  ||||||||||||    
T  17745328 cacttgggttggcctagtggtattggcttgggacctgagcgtgtgctcctcctcgaggtctcatgttcgattctctctggtgtcaatttag 17745238  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 50901581 - 50901675
Alignment:
Q  30 aacccacttgagttggtctagtggta-ttgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 122  Q
    |||||||||| ||||| ||||||||| ||| |||| ||||| | |||||||| ||| | |||||||||  |||||||||||||||| ||||||||    
T  50901581 aacccacttgggttggcctagtggtaattggcttgggacctggtagtgtgctcctcctcgaggtctcaaattcgattctctcagtgccaatttag 50901675  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 34460986 - 34460945
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagaccta 70  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  34460986 aaacccacttgagttggcttagtggtattgacttgagaccta 34460945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 16127120 - 16127053
Alignment:
Q  303 gcagcaagattacccggacgaacagataacgagataaaaaatgtatggcacacccatttgaagaaaag 370  Q
    ||||||| |||||| ||| ||||||| || || ||||||||| | |||||||| ||||||||||||||    
T  16127120 gcagcaaaattacctggaagaacagacaatgaaataaaaaatatgtggcacactcatttgaagaaaag 16127053  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 33731230 - 33731163
Alignment:
Q  300 attgcagcaagattacccggacgaacagataacgagataaaaaatgtatggcacacccatttgaagaa 367  Q
    |||||||||| | |||| ||| |||| ||||| || ||||||||||| |||||||| |||||||||||    
T  33731230 attgcagcaaaactaccaggaagaacggataatgaaataaaaaatgtgtggcacacgcatttgaagaa 33731163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 38979018 - 38978967
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgctt 80  Q
    |||||| ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  38979018 aacccatttgggttggcctagtggtattgacttgagacctaggagtgtgctt 38978967  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 19528403 - 19528325
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||||| ||||| || ||||||||| |||| || ||| ||||||||| ||| |  ||||||||||||||||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctc 19528325  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 29817672 - 29817746
Alignment:
Q  27 taaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttc 100  Q
    |||||| |||||| ||||| || ||| |||||||||||||||| |||||||||| |||||  || ||||||||||    
T  29817672 taaaactcacttgggttggcctggtgatattgacttgagacctgagagtgtgctcctcttcaagttctcaggttc 29817746  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 40257398 - 40257476
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattct 106  Q
    ||||||||||| ||||| || ||||||||| ||||||||||  ||||||||| ||| | ||||||||| |||| |||||    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattct 40257476  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 50919972 - 50920034
Alignment:
Q  48 tagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||||||||| |||| ||||||||||  || || |||| |||||||||||||||||    
T  50919972 tagtggtattgacttgaaacctgagagtgtgctcatccttaaggtttcaggttcgattctctc 50920034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 52029993 - 52029935
Alignment:
Q  50 gtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    ||||||||||||||||||||| ||||||||| ||  |  ||||||||||||||||||||    
T  52029993 gtggtattgacttgagacctaggagtgtgctccttctcaaggtctcaggttcgattctc 52029935  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 8177259 - 8177178
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||| ||||||||| |||||||||||| |||| || ||  ||||||||| ||| |  |||| |||||||||||||||||    
T  8177259 aaacccatttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctc 8177178  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 11068919 - 11068826
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgaga-cctagagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaattta 121  Q
    |||||| ||| |||| ||| |||||||||||||| || ||  ||||||||| |||||||||  ||||| ||| ||||||| |||||||||||||    
T  11068919 aacccatttgggttgatctggtggtattgacttgggatccaggagtgtgctcctctttgagacctcagattcaattctctccagtgtcaattta 11068826  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 36371469 - 36371550
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||| ||||| |||||||||||| ||||  ||||  ||||||||| ||| |  |||||| |||||||||||||||    
T  36371469 aaacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctctc 36371550  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 47044717 - 47044810
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 122  Q
    ||||||||||  |||| || |||||||||||||| || || ||||| |||| ||| | ||||||||||||||||||||| ||| ||||||||||    
T  47044717 aacccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctcaggttcgattctcccagcgtcaatttag 47044810  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 37109427 - 37109347
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| |  ||||||||||||||||||||||    
T  37109427 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 37109347  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 21660221 - 21660126
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 122  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||  |||||||||  || | ||||||||| |||||||| |||| |||||||||||||    
T  21660221 aaaccaacttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttag 21660126  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 21668985 - 21668890
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 122  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||  |||||||||  || | ||||||||| |||||||| |||| |||||||||||||    
T  21668985 aaaccaacttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttag 21668890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 46545711 - 46545805
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctcag-tgtcaatttag 122  Q
    |||||||||| ||||| |||||||||||| |||||||||| |||||||||| ||| |  || |||||| ||||||| |||| | |||||||||||    
T  46545711 aacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgattttctctgatgtcaatttag 46545805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 13901746 - 13901819
Alignment:
Q  34 cacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattct 106  Q
    |||||| |||||||||||||||||| ||||||||||  ||||||| | ||| ||||||||||| |||| |||||    
T  13901746 cacttgggttggtctagtggtattggcttgagacctgggagtgtgttcctccttgaggtctcaagttcaattct 13901819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 19112929 - 19112986
Alignment:
Q  51 tggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||||||||||||||||| ||||||||| ||||| ||| | |||||||||||||||    
T  19112929 tggtattgacttgagacctaggagtgtgctcctcttcgagttatcaggttcgattctc 19112986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 52254477 - 52254400
Alignment:
Q  33 ccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||||||||  ||||||||||||| ||  | |||||||||| ||| ||||||| ||||||| |||||||||    
T  52254477 ccacttgagttggtctgatggtattgacttgggatatgagagtgtgctcctccttgaggtttcaggttagattctctc 52254400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 3780736 - 3780657
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct 108  Q
    |||||||| || ||||||| |||||||||||||||||||| | ||| | |||||  ||||||||| |||||| |||||||    
T  3780736 aacccactagaattggtctggtggtattgacttgagacctgaaagtattcttcttcttgaggtcttaggttcaattctct 3780657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 7949531 - 7949436
Alignment:
Q  29 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 122  Q
    ||||||||||| | ||| |||| ||||||| |||| ||||| | |||||||| ||| |  ||||||||||||||||||||||  ||||||||||||    
T  7949531 aaacccacttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttag 7949436  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 43623516 - 43623441
Alignment:
Q  34 cacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct 108  Q
    |||||| ||| |||||||| ||||||||||||| |  | |||||||| ||| |||| |||||||||||||||||||    
T  43623516 cacttgggttagtctagtgatattgacttgagatcagggagtgtgctcctccttgaagtctcaggttcgattctct 43623441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 306379 - 306306
Alignment:
Q  37 ttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||||||||||||||||||| ||| || || |||||||| | |||||| | ||||||| ||||||| ||||    
T  306379 ttgagttggtctagtggtattgatttgggatctgagagtgtgatcctctttaaagtctcagattcgattttctc 306306  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 7292871 - 7292794
Alignment:
Q  33 ccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    ||||||| |||||||||||||||||| ||||  ||||  ||||||||| ||| |  | ||||||||||||||||||||    
T  7292871 ccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttcgattctctc 7292794  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 19229283 - 19229206
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctc 107  Q
    |||||| ||| ||||| || ||||||||| | || ||| |||| |||||| ||| | |||||||||||||||||||||    
T  19229283 aacccatttgggttggcctggtggtattggcctgggacttagaatgtgctcctcctcgaggtctcaggttcgattctc 19229206  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 47386826 - 47386773
Alignment:
Q  70 agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 122  Q
    |||||| ||||||  |||||||||||||||| |||||||| |||||||||||||    
T  47386826 agagtgcgcttcttcttgaggtctcaggttcaattctctctagtgtcaatttag 47386773  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 51948480 - 51948573
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaattta 121  Q
    |||||||||| ||||  || || ||||||||||| || |||| |||||||  ||| | |||||||||||||| ||||||| |||||||||||||    
T  51948480 aacccacttgggttgtcctggtagtattgacttgggatctaggagtgtgcccctcctcgaggtctcaggttcaattctctccagtgtcaattta 51948573  T

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Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 41709 - 41629
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| ||||| |||||||||||| ||||||| || ||||| |||| ||| | |||||||||||||| ||||||||    
T  41709 aacccacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcaggttcaattctctc 41629  T

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Target: scaffold0211 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 24053 - 24133
Alignment:
Q  30 aacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctctc 109  Q
    |||||||||| ||||| ||| ||||||||||||| ||| || ||||||||| ||||| || || |||||||||||| ||||    
T  24053 aacccacttgggttggcctaatggtattgacttgggacttaggagtgtgctcctcttcgaagtgtcaggttcgattatctc 24133  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 163074 - 162991
Alignment:
Q  41 gttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaatttag 122  Q
    |||||||||||||| |||||||  ||||| |||||||||| |||  | |||||| |||||||||||||| | ||||||||||||    
T  163074 gttggtctagtggttttgacttatgacctgagagtgtgctcctccataaggtctgaggttcgattctctccggtgtcaatttag 162991  T

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