View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1436_low_10 (Length: 322)

Name: NF1436_low_10
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1436_low_10
NF1436_low_10
[»] chr4 (1 HSPs)
chr4 (13-307)||(51877800-51878094)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 51878094 - 51877800
Alignment:
Q  13 cagatacagattatgcaatgcaccttgatcggcccccagcattcctgcgtcaatttatacacaagtttgatgtcctggttctcaacactggtcatcactg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51878094 cagatacagattatgcaatgcaccttgatcggcccccagcattcctgcgtcaatttatacacaagtttgatgtcctggttctcaacactggtcatcactg 51877995  T
Q  113 gaatcgagggaaacttaatgccaatcgatgggtaatgcatgttggtggtgtcccaaatactgataggaagatagctgtgatttgggctgccaagaatctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51877994 gaatcgagggaaacttaatgccaatcgatgggtaatgcatgttggtggtgtcccaaatactgataggaagatagctgtgatttgggctgccaagaatctt 51877895  T
Q  213 acaattcgtagcgttgttagttgggtggattcacagcttccaaaatatccaggtttgaaagcattttatcgtaccatttctcctagacatttttt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51877894 acaattcgtagcgttgttagttgggtggattcacagcttccaaaatatccaggtttgaaagcattttatcgtaccatttctcctagacatttttt 51877800  T

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