View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1436_low_11 (Length: 297)

Name: NF1436_low_11
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1436_low_11
NF1436_low_11
[»] chr5 (2 HSPs)
chr5 (8-54)||(29688860-29688906)
chr5 (8-53)||(29696974-29697019)
[»] chr4 (2 HSPs)
chr4 (53-92)||(45372517-45372556)
chr4 (8-54)||(48899467-48899513)
[»] chr8 (1 HSPs)
chr8 (63-93)||(4032386-4032416)
[»] chr3 (1 HSPs)
chr3 (8-54)||(11014781-11014827)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 29688906 - 29688860
Alignment:
Q  8 tcatattacaaatgcaatcaaacacatactacccaacaaatgcagcc 54  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||    
T  29688906 tcatattacaaatgcaatcaaacacatattaccctacgaatgcagcc 29688860  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 29697019 - 29696974
Alignment:
Q  8 tcatattacaaatgcaatcaaacacatactacccaacaaatgcagc 53  Q
    ||||||||||||||| |||||||| ||| ||||| |||||||||||    
T  29697019 tcatattacaaatgcgatcaaacatatattaccctacaaatgcagc 29696974  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 45372517 - 45372556
Alignment:
Q  53 ccttagtagaatttggatgatcaattcatgaggcatatgc 92  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  45372517 ccttagtagaatttgaatcatcaattcatgaggcatatgc 45372556  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 48899513 - 48899467
Alignment:
Q  8 tcatattacaaatgcaatcaaacacatactacccaacaaatgcagcc 54  Q
    |||| ||| |||||||||||||||||||||||||  |||||||||||    
T  48899513 tcatgttataaatgcaatcaaacacatactaccccgcaaatgcagcc 48899467  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 93
Target Start/End: Original strand, 4032386 - 4032416
Alignment:
Q  63 atttggatgatcaattcatgaggcatatgca 93  Q
    |||||||||||||||||||||||||||||||    
T  4032386 atttggatgatcaattcatgaggcatatgca 4032416  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 11014781 - 11014827
Alignment:
Q  8 tcatattacaaatgcaatcaaacacatactacccaacaaatgcagcc 54  Q
    ||||||||||||   ||||||||||||| ||||||||||||||||||    
T  11014781 tcatattacaaacaaaatcaaacacatattacccaacaaatgcagcc 11014827  T

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