View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_12 (Length: 287)
Name: NF1436_low_12
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 45128754 - 45129011
Alignment:
| Q |
21 |
ttgtcgtgttagtgcttcaaattccagtagtgaagtgatggaaaagcatgagaagagagagggtacaagagaagacactcacttgaggttgaggagaaat |
120 |
Q |
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| T |
45128754 |
ttgtcgtgttagcgcttcaaattccagaagtgaagtgatggaaaagcatgagaagagagagggtacaagagaagacactcacttgaggttgaggagaaat |
45128853 |
T |
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| Q |
121 |
aaccttggattgtgacagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacc |
220 |
Q |
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| T |
45128854 |
aaccttggattgtgacagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacc |
45128953 |
T |
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| Q |
221 |
tttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagaataat |
278 |
Q |
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| T |
45128954 |
tttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagagtaat |
45129011 |
T |
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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 40280697 - 40280855
Alignment:
| Q |
109 |
ttgaggagaaataaccttggattgtgacagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcacc |
208 |
Q |
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| T |
40280697 |
ttgaggacaaataactttggattgtgaaagcactgaggaaatgcatacatcaagggtaacatcatatttgtccacaaacttgctggtttctctgcttact |
40280796 |
T |
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| Q |
209 |
aatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacata |
267 |
Q |
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| T |
40280797 |
tggctcatgacctttgaacaaagcagggaaatggagtttctatagtactcacttacata |
40280855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 6632101 - 6632166
Alignment:
| Q |
139 |
cacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttact |
204 |
Q |
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| T |
6632101 |
cacagaagatatacaaacatcaagagtgacatcatacttgtcaacaaatctgcttgtttctgtact |
6632166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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