View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_13 (Length: 266)
Name: NF1436_low_13
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 45129240 - 45128983
Alignment:
| Q |
9 |
atgaacaaaagaaacaagatattcaaccttaaaggcatagcggtaagtaatgctacattgatgannnnnnnnattccatacaatttgctagctgttgata |
108 |
Q |
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| T |
45129240 |
atgaacaaaagaaacaagatattcaaccttaaaggcatagccgtaagtaaggctacattgatgattttttttattccatacaatttgctagctgttgata |
45129141 |
T |
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| Q |
109 |
ccaaagttgaattgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgc |
208 |
Q |
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| T |
45129140 |
ccaaagttgaattgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgc |
45129041 |
T |
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| Q |
209 |
aacttacaacatgttcactagagtgtgtaattactctcgttatgtaagtgagtacaat |
266 |
Q |
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| T |
45129040 |
aacttacaacatgttcactagagtgtgtaattactctcgttatgtaagtgagtacaat |
45128983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 40280985 - 40280878
Alignment:
| Q |
119 |
attgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaac |
218 |
Q |
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| T |
40280985 |
attgcagttgggaaatccacttctagaatatgccactgacttcaattcaagggctgagttcttctggtctcatggattgatatcagattcaacttacaaa |
40280886 |
T |
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| Q |
219 |
atgttcac |
226 |
Q |
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| T |
40280885 |
atgttcac |
40280878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 6632346 - 6632284
Alignment:
| Q |
132 |
aatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatgga |
194 |
Q |
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| T |
6632346 |
aatccagttttagaatttgcaacagattttaattcaagagctgagttcttttggtctcatgga |
6632284 |
T |
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