View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_19 (Length: 241)
Name: NF1436_low_19
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 25303879 - 25304106
Alignment:
| Q |
1 |
tatctcataaccaaataaccattatcagacaccagttttataactttcttgactttacctctcgaaacagtggacatgtaaaagaaccttgtattcacgt |
100 |
Q |
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| T |
25303879 |
tatctcataaccaaataaccattatcaaacaccagttttgtaactttcttgactttacctctagaaacagtggacatgtaaaagaaccttctattcacgt |
25303978 |
T |
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| Q |
101 |
ccctttgtttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctgaataacaagccgagcacacttctccgtatattcttctaaatgatt |
200 |
Q |
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| T |
25303979 |
ccctttgtttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctgaataacaagccgagcacacttctccatattttcttctaaatgatt |
25304078 |
T |
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| Q |
201 |
tgtattcaaacgatcgggttgcctatgc |
228 |
Q |
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| T |
25304079 |
tgtattcacacgattaggttgcctatgc |
25304106 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 7124523 - 7124477
Alignment:
| Q |
109 |
ttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctg |
155 |
Q |
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| T |
7124523 |
ttcaaccagtgcatttttgctctttgcttccaaaacgcctcctcctg |
7124477 |
T |
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