View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_21 (Length: 236)
Name: NF1436_low_21
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_21 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 24820790 - 24820577
Alignment:
| Q |
16 |
tcattgttggtgtcaaagtgcttcattggtgattcttccttccacatatcatttatgatggtactgatagcaagcatagggaaaacaaatcttccttcca |
115 |
Q |
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| T |
24820790 |
tcattgttggtgtcaaagtgcttcattggtgattcttccttccacatatcatttatgatggtactgatagcaagcatagggaaaacaaatcttccttcca |
24820691 |
T |
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| Q |
116 |
catagttaataatgaacatgttgaagacaaaaaagttatatttgagggtgagatttgggctactccaatacacttgaacctgtcaaaatcacaaccaatg |
215 |
Q |
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| T |
24820690 |
catagttaataatgaacatgttgaagacaaaaaagttatatttgagggtgagatttgggctactccaatacacttgaacctgtcaaaatcacaaccaatg |
24820591 |
T |
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| Q |
216 |
aagctcctatgcta |
229 |
Q |
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|||||||||||||| |
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| T |
24820590 |
aagctcctatgcta |
24820577 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 35902417 - 35902332
Alignment:
| Q |
16 |
tcattgttggtgtcaaagtgcttcattggtgattcttccttccac-atatcatttatgatggtactgatagcaagcatagggaaaa |
100 |
Q |
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| T |
35902417 |
tcattgttggtgtcatagtgcttcattggtgactcctccttccacgttatcatttataatggtacatgtatcaagcatagagaaaa |
35902332 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 42234683 - 42234629
Alignment:
| Q |
168 |
atttgggctactccaatacacttgaacctgtcaaaatcacaaccaatgaagctcc |
222 |
Q |
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| T |
42234683 |
atttgagctgctccaatacaattgaacctgtcaaaatcacacgcaatgaagctcc |
42234629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 29136577 - 29136519
Alignment:
| Q |
168 |
atttgggctactccaatacacttgaacctgtcaaaatcacaaccaatgaagctcctatg |
226 |
Q |
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| T |
29136577 |
atttgagctactctaatacaatggaacctgtcaaaatcacactcaatgaagctcatatg |
29136519 |
T |
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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 31022 - 31080
Alignment:
| Q |
168 |
atttgggctactccaatacacttgaacctgtcaaaatcacaaccaatgaagctcctatg |
226 |
Q |
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| T |
31022 |
atttgagctactctaatacaatggaacctgtcaaaatcacactcaatgaagctcatatg |
31080 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 1161799 - 1161837
Alignment:
| Q |
21 |
gttggtgtcaaagtgcttcattggtgattcttccttcca |
59 |
Q |
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| T |
1161799 |
gttggtgtcatattgcttcattggtgattcttccttcca |
1161837 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 28002865 - 28002815
Alignment:
| Q |
176 |
tactccaatacacttgaacctgtcaaaatcacaaccaatgaagctcctatg |
226 |
Q |
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| T |
28002865 |
tactctaatacaatggaacctgtcaaaatcacacccaatgaagctcatatg |
28002815 |
T |
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