View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_24 (Length: 235)
Name: NF1436_low_24
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 54218222 - 54218440
Alignment:
| Q |
1 |
tgaaaccgaattgcaggagcataacacagctactatagtgaccagtgtggatcgtaatgaccactatgataaccatgacctcctaagtggaccgtaattc |
100 |
Q |
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| T |
54218222 |
tgaaaccgaattgcaggagcataacacagctactatagtgaccagtgtggatcgtaatgatcactatgataaccatgacctcctaagtggaccgtaattc |
54218321 |
T |
|
| Q |
101 |
acactttataaatagtacttgcgtttgagtgattatttttcacggatgtgccttttgttgcttgcaaagacaactctctatttatctgaagccactctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218322 |
acactttataaatagtacttgcgtttgagtgattatttttcacggatgtgccttttgttgcttgcaaagacaactctctatttatctgaagccactctag |
54218421 |
T |
|
| Q |
201 |
tggtcgtagaatgaatcaa |
219 |
Q |
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||||||||||||||||||| |
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| T |
54218422 |
tggtcgtagaatgaatcaa |
54218440 |
T |
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