View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_26 (Length: 226)
Name: NF1436_low_26
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1251997 - 1252225
Alignment:
| Q |
1 |
caagataattgttagtattaataaggatat--------agttgaaaaaatattaataagtgcatataaaattttgtagatatagaaacaacaatgaggag |
92 |
Q |
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| T |
1251997 |
caagataattgttggtattaataaggatatagacatatagttgaaaaaatattaataagtgcatataaaattttgtagatatagaaacaacaatgaggag |
1252096 |
T |
|
| Q |
93 |
ccattgatttgcatcaaattgatatatcaatcaactatagtaataacatatgatgctctatgtacgatatatagtcatgtatgtttatgtcaactgtatg |
192 |
Q |
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| T |
1252097 |
ccattgatttgcatcaaattgatatatcaatcaactatagtaataacgtatgatgctctatgtacgatatatagtcatgtatgtttatgtcaactgtatg |
1252196 |
T |
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| Q |
193 |
ggcaaccatacttactcccatttatttct |
221 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
1252197 |
ggcaaccatacttactcccatttatttct |
1252225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 40344271 - 40344200
Alignment:
| Q |
2 |
aagataattgttagtattaataaggatatagttgaaaaaatattaataagtgcatataaaattttgtagata |
73 |
Q |
| |
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| T |
40344271 |
aagataattggtagtattaataagggtaaagttgaaaaaataataataaatgcatatataaatttgtagata |
40344200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12692 - 12732
Alignment:
| Q |
1 |
caagataattgttagtattaataaggatatagttgaaaaaa |
41 |
Q |
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| T |
12692 |
caagataatttgtagtattaataaggatatagttgaaaaaa |
12732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 46038265 - 46038329
Alignment:
| Q |
6 |
taattgttagtattaataaggatatagttgaaaaaatattaataagtgcatataaaattttgtaga |
71 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||| | | |||| ||||| ||||| |||||||| |
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| T |
46038265 |
taattggtagtattaataagggtatagttgaaaaaa-agtgataaatgcatttaaaaatttgtaga |
46038329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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