View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_27 (Length: 212)
Name: NF1436_low_27
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39425110 - 39425306
Alignment:
| Q |
1 |
cttattaaatgcattttaattttatnnnnnnnnntaaacgtgaattgttggcaggataacgaggatctagaagagaagattgatgaatgttggaaggatc |
100 |
Q |
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| T |
39425110 |
cttattaaatgcattttaattttataaaaaaaa-taaacgtgaattgttggcaggataacgaggatctagaagagaagattgatgaatgttggaaggatc |
39425208 |
T |
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| Q |
101 |
caccaaatattccagaatgtctttcatcacaactcaaaacatgtcgcattagagttttcaaagggacacaatatgatctgcaatttgcaatatatatc |
198 |
Q |
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| T |
39425209 |
caccaaacattccagaatgtctttcatcacaactcaaaacatgtcgcattagagttttcaaagggacacaatatgatctgcaatttgcaatatatatc |
39425306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 39457130 - 39456934
Alignment:
| Q |
1 |
cttattaaatgcattttaattttatnnnnnnnnntaaacgtgaattgttggcaggataacgaggatctagaagagaagattgatgaatgttggaaggatc |
100 |
Q |
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| T |
39457130 |
cttattaaatgcattttaattttataaaaaaaa-taaacgtgaattgttggcaggataacgaggatctagaagagaagattgatgaatgttggaaggatc |
39457032 |
T |
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| Q |
101 |
caccaaatattccagaatgtctttcatcacaactcaaaacatgtcgcattagagttttcaaagggacacaatatgatctgcaatttgcaatatatatc |
198 |
Q |
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| T |
39457031 |
caccaaacattccagaatgtctttcatcacaactcaaaacatgtcgcattagagttttcaaagggacacaatatgatctgcaatttgcaatatatatc |
39456934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 39438251 - 39438408
Alignment:
| Q |
40 |
gtgaattgttggcaggataacgaggatctagaagagaagattgatgaatgttggaaggatccaccaaatattccagaatgtctttcatcacaactcaaaa |
139 |
Q |
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| T |
39438251 |
gtgaattgttggcaggataataaggctatagaagaggcaattgatgaatgttggaaggatccaccaatagttccggaatgtctttcatcgcagctcaaaa |
39438350 |
T |
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| Q |
140 |
catgtcgcattagagttttcaaagggacacaatatgatctgcaatttgcaatatatat |
197 |
Q |
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| T |
39438351 |
catgtcacattagagtttacaaaggcacaaaatatgatctcgaatttacaaaatatat |
39438408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 39462510 - 39462423
Alignment:
| Q |
41 |
tgaattgttggcaggataacgaggatctagaagagaagattgatgaatgttggaaggatccaccaaatattccagaatgtctttcatc |
128 |
Q |
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| T |
39462510 |
tgaaatgttggcaggataataaggttctagaagagacgattgatgaatgttggaaggatccactaattgttccagaatgtctttcatc |
39462423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 43099215 - 43099270
Alignment:
| Q |
88 |
tgttggaaggatccaccaaatattccagaatgtctttcatcacaactcaaaacatg |
143 |
Q |
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| T |
43099215 |
tgttggaagcatccaccaagtgttccagaatgtctttcattgcagctcaaaacatg |
43099270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 2019487 - 2019537
Alignment:
| Q |
90 |
ttggaaggatccaccaaatattccagaatgtctttcatcacaactcaaaac |
140 |
Q |
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| T |
2019487 |
ttggaaggatccacaaattattccacaatgtctttcatcacgacttaaaac |
2019537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 38490153 - 38490099
Alignment:
| Q |
110 |
ttccagaatgtctttcatcacaactcaaaacatgtcgcattagagttttcaaagg |
164 |
Q |
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||||| |||||||||||||||| |||| ||||||| ||||||||| || |||||| |
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| T |
38490153 |
ttccaaaatgtctttcatcacagctcagaacatgttgcattagaggttacaaagg |
38490099 |
T |
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