View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_3 (Length: 539)
Name: NF1436_low_3
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_3 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 8 - 539
Target Start/End: Complemental strand, 39457689 - 39457158
Alignment:
| Q |
8 |
agataattctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctatta |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39457689 |
agatatttctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctatta |
39457590 |
T |
|
| Q |
108 |
ggatgtcctgttctagcggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttga |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39457589 |
ggatgtcctgttctagaggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttga |
39457490 |
T |
|
| Q |
208 |
tcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39457489 |
tcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaa |
39457390 |
T |
|
| Q |
308 |
ctcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtcttgtgtaactcatgcagtggatgctcccatg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39457389 |
ctcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtcttgtgtaactcatgcagtggatgctcccatg |
39457290 |
T |
|
| Q |
408 |
ttacatgcaatttcccatgtttgagagtctgactcacttggagcttagctttaattctgaagtttataatccgaagtggaagtggttgatgagaatgctc |
507 |
Q |
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| T |
39457289 |
ttacatgcaatttcccatgtttgagagtctgactcacttggagcttagctttaattctgaagtttataatccgaagtggaagtggttgatgagaatgctc |
39457190 |
T |
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| Q |
508 |
aaactttctccaaaacttcaaaatcttatcat |
539 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39457189 |
aaactttctccaaaacttcaaaatcttatcat |
39457158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 535
Target Start/End: Original strand, 39437582 - 39438098
Alignment:
| Q |
8 |
agataattctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctatta |
107 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || | |||| || || | ||| ||| ||||| |
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| T |
39437582 |
agatatttctcaagtggatttatatttacctagtcttcaaactctccatttgcataaggttgattttggatctcatgaacaactgatgaagcttttatta |
39437681 |
T |
|
| Q |
108 |
ggatgtcctgttctagcggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttga |
207 |
Q |
| |
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| |||||| |||||| ||||||||||||||| |||||||||||| || | | | | |||||| | | |||||||||| ||||||| | | | | |
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| T |
39437682 |
agctgtcctattctagaggatttggaaacaactaaaagttgctttatgttcggtctgagtaaccgttttttggtggactttataaccttacctaatataa |
39437781 |
T |
|
| Q |
208 |
tcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaa |
307 |
Q |
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||||||| |||||| ||||||| | ||||| |||||||||||||||| ||||||| | ||||| |||||| ||||||||| ||||| | ||| |||| |
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| T |
39437782 |
tcaaggcaaggattagtgaattctttgttccacttagtatggtttgtaaagcagagaacttacgtatagaaaaagtggtatgtatatcgt--ggtgctaa |
39437879 |
T |
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| Q |
308 |
ctcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtcttgtgtaactcatgcagtggatgctcccatg |
407 |
Q |
| |
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|||||||||||| ||| || ||| | |||||| || |||||| ||||||||||||| ||||||||||||||| ||||||||||| || ||| |
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| T |
39437880 |
ctcctaaataaacc----tttaataaaattgtgattt-cgcactata----catatttaatgttatgtcttgtgtaactcttgcagtggatgttcacata |
39437970 |
T |
|
| Q |
408 |
ttacatgcaatttcccatgtttgagagtctgactcacttggagcttagctttaattctgaagtttataatccgaagtggaagtggttgatgagaatgctc |
507 |
Q |
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|| ||||||| ||||||||||||||||||||| |||||||||||||||||| |||| | || ||| |||||| |||| |||||||| | |||||||| |
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| T |
39437971 |
ttgcatgcaacttcccatgtttgagagtctgattcacttggagcttagcttaaattttaaaatttggtatccgaggtgggagtggttgctcggaatgctc |
39438070 |
T |
|
| Q |
508 |
aaactttctccaaaacttcaaaatctta |
535 |
Q |
| |
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|||| |||||| ||||| || ||||||| |
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| T |
39438071 |
aaacattctcccaaactacagaatctta |
39438098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 8 - 539
Target Start/End: Original strand, 39424559 - 39425082
Alignment:
| Q |
8 |
agataattctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctatta |
107 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| | |||||||| ||||| |||||||||||| ||| || ||||| |
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| T |
39424559 |
agataattctcaagtggatttacatttacctagtcttaaaactctccatttgaatagggttgattttgaatgtcatgagcatctaatgaagattttatta |
39424658 |
T |
|
| Q |
108 |
ggatgtcctgttctagcggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttga |
207 |
Q |
| |
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| |||||| |||||| ||||||||| ||| || ||||| |||| |||| ||||||||| || | || ||| |||||| |||| ||||| |
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| T |
39424659 |
agttgtcctattctagaggatttgga---aactaagctttgctgtgtgatggatttccaaagccgtttttcggatgaatttgcagcctttcccaatttga |
39424755 |
T |
|
| Q |
208 |
tcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaa |
307 |
Q |
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||||||| |||||| |||||| |||||||| |||||||||||||||||||| ||| |||| | | || ||||||||||||||| | ||||||| |
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| T |
39424756 |
tcaaggcaaggattactgaattctatattccacttagtatggtttgtaaggcaaagacgctacatattga---agtggtatgaatatc--gtcgtcctaa |
39424850 |
T |
|
| Q |
308 |
ctcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatat----ttaatgttgtgtcttgtgtaactcatgcagtggatgctcc |
403 |
Q |
| |
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|||| |||||||| |||| || || | |||||||| ||||||| || ||||| ||||||||||||||||||| ||||||| || ||| || |
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| T |
39424851 |
ctcc----taaataaacgtttaatttaattttgattttcttactatacatacatatctaattaatgttgtgtcttgtgtgactcatgaagcctatgttca |
39424946 |
T |
|
| Q |
404 |
catgttacatgcaatttcccatgtttgagagtctgactcacttggagcttagctttaattctgaagtttataatccgaagtggaagtggttgatgagaat |
503 |
Q |
| |
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|| || || ||| ||||||||||||||||||||||| ||||| |||||||| | || | |||||| |||||||||||||||||||||||||||| |
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| T |
39424947 |
caaattgcaagcaccttcccatgtttgagagtctgacttacttgaagcttagcctatcttttaaagtttggtatccgaagtggaagtggttgatgagaat |
39425046 |
T |
|
| Q |
504 |
gctcaaactttctccaaaacttcaaaatcttatcat |
539 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39425047 |
gctcaaactttctccaaaacttcaaaatcttatcat |
39425082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 365 - 539
Target Start/End: Complemental strand, 39462856 - 39462679
Alignment:
| Q |
365 |
taatgttgtgtcttgtgtaactcatgcagtggatgctcccatgttacatgcaatt---tcccatgtttgagagtctgactcacttggagcttagctttaa |
461 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||||||| || | || | |||||| ||| |||||||||| || ||||| ||||||| | |
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| T |
39462856 |
taatgttgtgtcttgtgtaactcattcagtggacactcccatgttgcacggaactacttcccatttttcagagtctgacccatctggagattagcttata |
39462757 |
T |
|
| Q |
462 |
ttctgaagtttataatccgaagtggaagtggttgatgagaatgctcaaactttctccaaaacttcaaaatcttatcat |
539 |
Q |
| |
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||| | ||| ||||||||||||| |||||| || ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
39462756 |
ctctagaatttggtatccgaagtggaattggttgctgggaatgctcaaaatttctccaaaacttgaaaatcttatcat |
39462679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 39463201 - 39463078
Alignment:
| Q |
15 |
tctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctattaggatgtc |
114 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||| |||||||||| ||| | |||| ||| |||| |||||||||||| ||| ||| ||||| | |||| |
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| T |
39463201 |
tctcaagtggatttatatttacctagtcctaaaattctccatttgaatagggttgagtttggatgtcatgagcatctaatgaagcttttattaagctgtc |
39463102 |
T |
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| Q |
115 |
ctgttctagcggatttggaaacaa |
138 |
Q |
| |
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|| || ||| |||||||||||||| |
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| T |
39463101 |
ctattttagaggatttggaaacaa |
39463078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 460
Target Start/End: Complemental strand, 14350111 - 14350070
Alignment:
| Q |
419 |
ttcccatgtttgagagtctgactcacttggagcttagcttta |
460 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||| ||||| |
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| T |
14350111 |
ttcccatgtttcagagtctgacttacttggagcttaacttta |
14350070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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