View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1436_low_6 (Length: 381)
Name: NF1436_low_6
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 8022585 - 8022935
Alignment:
| Q |
18 |
aattcatcctactcttatggtttgatgtcagtgatccccaatcttctccggcccactccatcgaagacgatgtgcaacaatttcccatatatatttgtct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8022585 |
aattcatcctactcttatggtttgatgtcagtgatccccaatcttctccggcccactccatcgaagatgatgtgcaacaatttcccatatatatttgtct |
8022684 |
T |
|
| Q |
118 |
tttggtgtgcgcggattttctccaacaatggtctagccaatttacgcactagctaannnnnnngaacgaaccaacgaggcnnnnnnnnnnnnnnctataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||| |
|
|
| T |
8022685 |
tttggtgtgcgcggattttctccaacaatggtctagccaatttacgcactagctaatttttttgaacaaaccaacgaagc-aaaaaaaaaaaaactataa |
8022783 |
T |
|
| Q |
218 |
tcgtcgaagaaacctaatagctgcagaatcagtcatcaggaggaacaaacaaaaaagtagggacaatatcaaaaaattctatgtgtgtaagaagatgaag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022784 |
tcgtcgaagaaacctaatagctgcagaatcagtcatcaggagggacaaacaaaaaagtaggaacaatatcaaaaaattctatgtgtgtaagaagatgaag |
8022883 |
T |
|
| Q |
318 |
atacatatgttaatgttgaagtgtttgtacaaatggaatgacgtgagagaat |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022884 |
atacatatgttaatgttgaagtgtttgtacaaatggaatgacgtgagagaat |
8022935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University