View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_7 (Length: 364)
Name: NF1436_low_7
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 49503730 - 49503628
Alignment:
| Q |
19 |
ttggagtatgccatgggactatgggaggatttgaggtcaaggatgacaaatcgttaggaagcaaaaactatcactaacaaactatgatacaactatggtt |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
49503730 |
ttggagtatgccatgggactatgggagggtttgaggtcaaggatgacaaatcgttaggaagcaaaaactatcact---aaactatgataaaactatggtt |
49503634 |
T |
|
| Q |
119 |
ctaagc |
124 |
Q |
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|||||| |
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| T |
49503633 |
ctaagc |
49503628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 49503581 - 49503538
Alignment:
| Q |
171 |
ttttcattcatttgattcttttgcataatgtgtcaaagacacta |
214 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
49503581 |
ttttcattcatttgattcctctgcataatgtgtcaaagacacta |
49503538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 24977194 - 24977256
Alignment:
| Q |
171 |
ttttcattcatttgattcttttgcataatgtgtcaaagacactacatatagaaaggataatgg |
233 |
Q |
| |
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| T |
24977194 |
ttttcattcattttattgatttgcatagtgtctcaaagacactatatatagaaaggataatgg |
24977256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 24977096 - 24977146
Alignment:
| Q |
72 |
ttaggaagcaaaaactatcactaacaaactatgatacaactatggttctaa |
122 |
Q |
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|||| |||||||| |||||||||||||||||||||| | ||| |||||||| |
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| T |
24977096 |
ttagaaagcaaaagctatcactaacaaactatgataaagctagggttctaa |
24977146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 27065867 - 27065812
Alignment:
| Q |
70 |
cgttaggaagcaaaaa-ctatcactaacaaactatgatacaactatggttctaagc |
124 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
27065867 |
cgtttggaagcaaaaagctatcactaacaaactatgataaaactagggttctaagc |
27065812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 27086970 - 27086915
Alignment:
| Q |
70 |
cgttaggaagcaaaaa-ctatcactaacaaactatgatacaactatggttctaagc |
124 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
27086970 |
cgtttggaagcaaaaagctatcactaacaaactatgataaaactagggttctaagc |
27086915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 27065797 - 27065744
Alignment:
| Q |
171 |
ttttcattcatttgattcttttgcataatgtgtcaaagacactacatatagaaa |
224 |
Q |
| |
|
|||| |||||||| ||| |||||||| |||||||||||||||| ||||||||| |
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| T |
27065797 |
tttttattcattttattgatttgcatagtgtgtcaaagacactatatatagaaa |
27065744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 27086900 - 27086847
Alignment:
| Q |
171 |
ttttcattcatttgattcttttgcataatgtgtcaaagacactacatatagaaa |
224 |
Q |
| |
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|||| |||||||| ||| |||||||| |||||||||||||||| ||||||||| |
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|
| T |
27086900 |
tttttattcattttattgatttgcatagtgtgtcaaagacactatatatagaaa |
27086847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 38618593 - 38618646
Alignment:
| Q |
71 |
gttaggaagcaaaaactatcactaacaaactatgatacaactatggttctaagc |
124 |
Q |
| |
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|||||||||||||| || ||||||||||| ||||||| ||||| |||||||||| |
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| T |
38618593 |
gttaggaagcaaaagctgtcactaacaaattatgataaaactagggttctaagc |
38618646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 9664909 - 9664949
Alignment:
| Q |
199 |
tgtgtcaaagacactacatatagaaaggataatggataaca |
239 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||| |
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| T |
9664909 |
tgtgtcaaagacactatatataggaaggataatggataaca |
9664949 |
T |
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