View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1436_low_8 (Length: 349)

Name: NF1436_low_8
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1436_low_8
NF1436_low_8
[»] chr1 (2 HSPs)
chr1 (100-335)||(24820289-24820524)
chr1 (24-101)||(14185525-14185602)
[»] chr7 (3 HSPs)
chr7 (221-313)||(37361000-37361092)
chr7 (21-88)||(37361311-37361378)
chr7 (154-229)||(37361234-37361309)
[»] chr6 (3 HSPs)
chr6 (149-215)||(18331314-18331380)
chr6 (21-79)||(18331401-18331459)
chr6 (23-67)||(32445304-32445348)
[»] chr2 (2 HSPs)
chr2 (149-215)||(38945241-38945307)
chr2 (21-79)||(38945328-38945386)
[»] chr3 (1 HSPs)
chr3 (113-222)||(55352450-55352559)
[»] chr5 (1 HSPs)
chr5 (113-222)||(18447268-18447377)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 100 - 335
Target Start/End: Original strand, 24820289 - 24820524
Alignment:
Q  100 gtgtgggtgtctccttctataggtttcaaatttcaagttatacatatgtgagtttctgtcatatgtgtgtattctaatctctttcttaaattttgacaag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24820289 gtgtgggtgtctccttctataggtttcaaatttcaagttatacatatgtgagtttctgtcatatgcgtgtattctaatctctttcttaaattttgacaag 24820388  T
Q  200 tcggtgatttacatggtttaatattttttgaagtgatgcttggcaaaattgcatggtttctattgggtttaattgtttgtaagttgtgtgattgaaacta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24820389 tcggtgatttacatggtttaatattttttgaagtgatgcttggcaaaattgcatggtttctattgggtttaattgtttgtaagttgtgtgattgaaacta 24820488  T
Q  300 tatgtgatccttttgtctctgttggcataaatcata 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  24820489 tatgtgatccttttgtctctgttggcataaatcata 24820524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 14185525 - 14185602
Alignment:
Q  24 ttaaactacctataaatgttgtgattagttttacaaaatgtaatggtagattttaagtttcattactttaatctttgt 101  Q
    |||||||||||||| |||||||||||||||||| | ||||  || |||||  |||||||  | || ||||||||||||    
T  14185525 ttaaactacctatacatgttgtgattagttttaaagaatgatatagtagacattaagttataatagtttaatctttgt 14185602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 37361092 - 37361000
Alignment:
Q  221 tattttttgaagtgatgcttggcaaaattgcatggtttctattgggtttaattgtttgtaagttgtgtgattgaaactatatgtgatcctttt 313  Q
    |||||||||||||||||||||||  ||||||| | |||||||||| |||| |  |||||||||||||||||||||||| ||||||||||||||    
T  37361092 tattttttgaagtgatgcttggcttaattgcaagatttctattggttttactattttgtaagttgtgtgattgaaactctatgtgatcctttt 37361000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 37361378 - 37361311
Alignment:
Q  21 tgattaaactacctataaatgttgtgattagttttacaaaatgtaatggtagattttaagtttcatta 88  Q
    |||||||| |||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37361378 tgattaaaatactgataaatgttgtgattagttttacaaaatttaatggtagattttaagtttcatta 37361311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 37361309 - 37361234
Alignment:
Q  154 tctgtcatatgtgtgtattctaatctctttcttaaattttgacaagtcggtgatttacatggtttaatattttttg 229  Q
    ||||||||| | ||| ||||| ||||||||| |||||||||| ||   ||||||||||| | ||||||||||||||    
T  37361309 tctgtcataggcgtgcattcttatctctttcataaattttgataaactggtgatttacaagttttaatattttttg 37361234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 18331380 - 18331314
Alignment:
Q  149 gagtttctgtcatatgtgtgtattctaatctctttcttaaattttgacaagtcggtgatttacatgg 215  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||| || | ||||| ||||||||    
T  18331380 gagtttctgtcatatgtgtctattcttatctctttcttaaattttgataatttggtgacttacatgg 18331314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 18331459 - 18331401
Alignment:
Q  21 tgattaaactacctataaatgttgtgattagttttacaaaatgtaatggtagattttaa 79  Q
    ||||||| |||||||||||| ||||||  |||||||||||||||||||  |||||||||    
T  18331459 tgattaagctacctataaatattgtgagaagttttacaaaatgtaatgaaagattttaa 18331401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 32445304 - 32445348
Alignment:
Q  23 attaaactacctataaatgttgtgattagttttacaaaatgtaat 67  Q
    ||||||||||||||| ||||||||||||| |||| | ||||||||    
T  32445304 attaaactacctatacatgttgtgattagctttaaagaatgtaat 32445348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 38945307 - 38945241
Alignment:
Q  149 gagtttctgtcatatgtgtgtattctaatctctttcttaaattttgacaagtcggtgatttacatgg 215  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||| || | ||||| ||||||||    
T  38945307 gagtttctgtcatatgtgtctattcttatctctttcttaaattttgataatttggtgacttacatgg 38945241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 38945386 - 38945328
Alignment:
Q  21 tgattaaactacctataaatgttgtgattagttttacaaaatgtaatggtagattttaa 79  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  38945386 tgattaagctacctataaatgttgtgatgagttttacaaaatgtaatgaaagattttaa 38945328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 55352450 - 55352559
Alignment:
Q  113 cttctataggtttcaaatttcaagttatacatatgtgagtttctgtcatatgtgtgtattctaatctctttcttaaattttgacaagtcggtgatttaca 212  Q
    |||||||||||| ||||| | ||| |||||||||| |||||  ||||||| ||||||||||| | |||||||||||  |||||  | | ||| |||||||    
T  55352450 cttctataggttgcaaatgtgaagctatacatatgagagttgttgtcataggtgtgtattcttacctctttcttaagatttgatgatttggtaatttaca 55352549  T
Q  213 tggtttaata 222  Q
    ||||||||||    
T  55352550 tggtttaata 55352559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 18447377 - 18447268
Alignment:
Q  113 cttctataggtttcaaatttcaagttatacatatgtgagtttctgtcatatgtgtgtattctaatctctttcttaaattttgacaagtcggtgatttaca 212  Q
    |||||| ||||| ||||| | ||| |||||||||| |||||  ||||| | ||||||||||| |||||||||||||  |||||  | | ||| |||||||    
T  18447377 cttctacaggttgcaaatgtgaagctatacatatgagagttgttgtcaaaggtgtgtattcttatctctttcttaagatttgatgatttggtaatttaca 18447278  T
Q  213 tggtttaata 222  Q
    ||||||||||    
T  18447277 tggtttaata 18447268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University