View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1436_low_9 (Length: 346)
Name: NF1436_low_9
Description: NF1436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1436_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 5673160 - 5673332
Alignment:
| Q |
1 |
tttaactttagactaaaattttaatttgtata--tatatattattagtgtaaaacaattttacacaaagtctattcaaattaaattatataaatatttaa |
98 |
Q |
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| T |
5673160 |
tttaactctagactaaaattttaatttgtatatatatatattattagtgtaaaacaattttacacaaagtctattcaaatttcattatataaatatgtaa |
5673259 |
T |
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| Q |
99 |
taatgctatttcttgaaatacatacataaatatctaaaccatgggaaagttgatgttaaagttttattcgaag |
171 |
Q |
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| T |
5673260 |
taatgctatttcttgaaatacatacataaatatctaaaccatgggaaagttgatattaaagttttattcgaag |
5673332 |
T |
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Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 5673396 - 5673490
Alignment:
| Q |
235 |
ccgtcaaactagttcctaaagtatataaaaatctgtcaattcagtccttaacgtccgccaattctattgtccattgggaatatccatgtgtctac |
329 |
Q |
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| T |
5673396 |
ccgtcaaactagttcctaaagtatataaaaatctgtcaattcagtccttaacgtccgccaattctactgtccattgggaatatctatgtgtctac |
5673490 |
T |
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