View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14370_low_2 (Length: 374)
Name: NF14370_low_2
Description: NF14370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14370_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 31 - 372
Target Start/End: Original strand, 2491100 - 2491444
Alignment:
| Q |
31 |
attaggtggatcttatcatgccatgttgcttttaagatttcaatcacattttaatctaatagtgcaactcccgcgactctatcattttttactccaagcg |
130 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2491100 |
attaggtggatcttattatgccatgttgcttttaagatttcaatcacattttaatctaatagtgcaactcccgcgactctatcattttttactccaagcg |
2491199 |
T |
|
| Q |
131 |
ttgagatttgatggagtaaatccatatttttacatttaagcaaaggttctttatgcaaaggcagctttaaacaatcatgtctaccacataaacatgttcc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2491200 |
ttgagatttgatggagtaaatccatatttttacatttaagcaaaggttctttatgcaaaggcagctttaaacaatcatgtctaccacataaacatgttcc |
2491299 |
T |
|
| Q |
231 |
aatggcgaaacacaacaaataacagttagtt---aagcttaaaaacacagaaattcccaatgggaattgctcttagcattttatgtctctgaactaggtc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2491300 |
aatggcgaaacacaacaaataacagttagttaagaagcttaaaaacacagaaactcccaatgggaattgctcttagcattttatgtctctgaactaggtc |
2491399 |
T |
|
| Q |
328 |
gcatatccggggttcctttcctaattcaatttgtcctatgtttct |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2491400 |
gcatatccggggttcctttcctaattcaatttgtcttatgtttct |
2491444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University