View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14370_low_3 (Length: 259)
Name: NF14370_low_3
Description: NF14370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14370_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 40 - 247
Target Start/End: Original strand, 47918384 - 47918591
Alignment:
| Q |
40 |
aacatgcaaccccaaatttattatatgcttcttctccactacccatttgtgttccagtgtgaggagnnnnnnngacctcataactaaacacttgtccacc |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47918384 |
aacatgcaaccccaaatttattatatgcttcttctccactacccatttgtgttccagtgtgaggagtttttttgacctcataactaaacacttgtccacc |
47918483 |
T |
|
| Q |
140 |
ccattgaaccaatgatgcagaactttgtaggttactcactaactcttttggccaataacctacaggaatgttattcttcactttaagccaccagtttcca |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47918484 |
ccattgaaccaatgatgcagaactttgtaggttactcactaactcttttggccaataacctacaggaatgttattcttcactttaagccaccagtttcca |
47918583 |
T |
|
| Q |
240 |
gaattatc |
247 |
Q |
| |
|
|||||||| |
|
|
| T |
47918584 |
gaattatc |
47918591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 47928178 - 47928345
Alignment:
| Q |
72 |
tctccactacccatttgtgttccagtgtgaggagnnnnnnn---gacctcataactaaacacttgtccaccccattgaaccaatgatgcagaactttgta |
168 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| | || |
|
|
| T |
47928178 |
tctccactacccatctgtgttcctgtgtgaggaggttttgttttgacctcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtctta |
47928277 |
T |
|
| Q |
169 |
ggttactcactaactcttttggccaataacctacaggaatgttattcttcactttaagccaccagttt |
236 |
Q |
| |
|
|||| | ||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
47928278 |
aattacctaataactctgctggccaataacctacagggatgttattcttcactttaaaccaccagttt |
47928345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 47946747 - 47946920
Alignment:
| Q |
65 |
tgcttcttctccactacccatttgtgttccagtgtgaggagnnnnnnng---acctcataactaaacacttgtccaccccattgaaccaatgatgcagaa |
161 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
47946747 |
tgctgcttctccactacccatttgtgttcctgtgtgaggaggggttgttttcacattataactaaacacttgtccaccccattgaaccaatgttgcacta |
47946846 |
T |
|
| Q |
162 |
ctttgtaggttactcactaactcttttggccaataacctacaggaatgttattcttcactttaagccaccagtt |
235 |
Q |
| |
|
||||| ||||| ||||| | || |||||||||||||||| || |||| ||||| | ||||||||||||| |
|
|
| T |
47946847 |
tgttgtaagttacccactatcgctgctggccaataacctacaatgattttatccttcattctaagccaccagtt |
47946920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 47909233 - 47909283
Alignment:
| Q |
55 |
atttattatatgcttcttctccactacccatttgtgttccagtgtgaggag |
105 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
47909233 |
atttattatatgcttcttctccactccccatttgtgttcctgtgtgaggag |
47909283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 47935605 - 47935701
Alignment:
| Q |
65 |
tgcttcttctccactacccatttgtgttccagtgtgaggagnnnnnnn---gacctcataactaaacacttgtccaccccattgaaccaatgatgca |
158 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
47935605 |
tgcttcttctccactacccatctgtgttcctgtgtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgca |
47935701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 47909369 - 47909417
Alignment:
| Q |
188 |
tggccaataacctacaggaatgttattcttcactttaagccaccagttt |
236 |
Q |
| |
|
||||||||||||||| || || |||||||| | |||||||||||||||| |
|
|
| T |
47909369 |
tggccaataacctactggtatattattcttaattttaagccaccagttt |
47909417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University