View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14371_high_11 (Length: 224)
Name: NF14371_high_11
Description: NF14371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14371_high_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 3117706 - 3117486
Alignment:
| Q |
4 |
agaagcacttctataacaagccataaacgtttatcgtataagtgcttatgtatgctgctagctttttatgatgattgtgttgtgtttggtgcatgtgtat |
103 |
Q |
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| T |
3117706 |
agaagcacttctataacaagccataaacgtttatcatataagtgcttatgtatgctgctagctttttatgatgattgtgttgtgtttggtgcacgtgtat |
3117607 |
T |
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| Q |
104 |
gtgtttaggtacatggttatagaatttcattatggagtgagcacataggaggtgtggaagaatgtttcaagcaaccagagagcattgaatgtgagagaag |
203 |
Q |
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| T |
3117606 |
gtgtttaggtacatggttatagaatgtcactatggagtgagcacataggaggtgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaag |
3117507 |
T |
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| Q |
204 |
aataaggtcattgagtgagta |
224 |
Q |
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| T |
3117506 |
aataaggtcattgagtgagta |
3117486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 3111210 - 3110990
Alignment:
| Q |
4 |
agaagcacttctataacaagccataaacgtttatcgtataagtgcttatgtatgctgctagctttttatgatgattgtgttgtgtttggtgcatgtgtat |
103 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111210 |
agaagcacttctataacaagccataaacgtttatcatataagtgcttatgtatgctgctagctttttatgatgattgtgttgtgtttggtgcatgtgtat |
3111111 |
T |
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| Q |
104 |
gtgtttaggtacatggttatagaatttcattatggagtgagcacataggaggtgtggaagaatgtttcaagcaaccagagagcattgaatgtgagagaag |
203 |
Q |
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| T |
3111110 |
gtgttcaggtgcatggctatagaatgtcattgtggagtgagcacataggaggtgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaag |
3111011 |
T |
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| Q |
204 |
aataaggtcattgagtgagta |
224 |
Q |
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| T |
3111010 |
aataaggtcattgagtgagta |
3110990 |
T |
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