View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14371_high_5 (Length: 394)
Name: NF14371_high_5
Description: NF14371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14371_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 4759940 - 4759684
Alignment:
| Q |
1 |
ggaggaggtggtggaagaaactgaaattttgctgcaaaagacagtgaagatgcttcactttggaagctgggaagagaaggagatagctgcaaaagagatt |
100 |
Q |
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| T |
4759940 |
ggaggaggtggtggaagaaactgaaattttgctgcaaaagacagtgaagatgcttcactttggaagctgggaagagaaggagatagctgcaaaagagatt |
4759841 |
T |
|
| Q |
101 |
gaaagtttagttaaagaagatgttaaggttagaaagttgataacagaacttggagtggtgccggttttggtatctatggtggcgtcgcaggtggttagtc |
200 |
Q |
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| T |
4759840 |
gaaagtttagttaaagaagatgttaaggttagaaagttgataacagaacttggagtggtgccggttttggtatctatggtggcgtcacaggtggttagtc |
4759741 |
T |
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| Q |
201 |
accggagagcagggttaacggcgttgatttacctagctgatggaacttacatgtaag |
257 |
Q |
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| T |
4759740 |
accggagagcagggttgacggcgttgatttacctagctgatggaacttacacgtaag |
4759684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 4759655 - 4759554
Alignment:
| Q |
267 |
atcaagcagcctaacagcgaatttcacgcaccaccaggttcaaactcatgtcacaatatatgaaatgtctctagannnnnnnncttcatgtcttattagt |
366 |
Q |
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| T |
4759655 |
atcaagcagcctaacagcgaatttcacgcacca---ggttcaaactcgtctcacaatatatgaaatgtctctagattttttttcttcatgtcttattagt |
4759559 |
T |
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| Q |
367 |
ttttt |
371 |
Q |
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||||| |
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| T |
4759558 |
ttttt |
4759554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 26982283 - 26982154
Alignment:
| Q |
44 |
gtgaagatgcttcactttggaagctgggaagagaaggagatagctgcaaaagagattgaaagtttagttaaagaagatgttaaggttagaaagttgataa |
143 |
Q |
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||||||| |||||||||||| |||||||||||||| ||| ||| |||||||| ||||| | | | |||| ||||||||||||| ||||||||||| | |
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| T |
26982283 |
gtgaagaagcttcactttgggagctgggaagagaaagaggaagcagcaaaagatattgagatgctggctaaacaagatgttaaggtcagaaagttgatga |
26982184 |
T |
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| Q |
144 |
cagaacttggagtggtgccggttttggtat |
173 |
Q |
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| T |
26982183 |
ctgaacttcgggtggtgcctgtattggtat |
26982154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 26999135 - 26999187
Alignment:
| Q |
44 |
gtgaagatgcttcactttggaagctgggaagagaaggagatagctgcaaaaga |
96 |
Q |
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||||||| |||||||||||| |||||||||||||| ||| ||| |||||||| |
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| T |
26999135 |
gtgaagaagcttcactttgggagctgggaagagaaagaggaagcagcaaaaga |
26999187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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