View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14371_high_6 (Length: 380)
Name: NF14371_high_6
Description: NF14371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14371_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 1049181 - 1049539
Alignment:
| Q |
13 |
acaacaatgttcctcaaaccattgctgtcgagtattattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtctcagacactgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1049181 |
acaacaatgttcctcaaaccattgctgtcgagtattattctcagagaacctctaaaggaggccttctcatagctgaagctactggtgtctcagacactgc |
1049280 |
T |
|
| Q |
113 |
tcaaggctatccaaacacgccaggtatatggactaaagagcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1049281 |
tcaaggctatccaaacacgccaggtatatggactaaagagcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttc |
1049380 |
T |
|
| Q |
213 |
tgtcaaatttggcatgctggaagggtttcaaattcaggtatgtatctatttcgtcatatcattatttattatgtaaataaatgtgaccggaaggtctaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1049381 |
tgtcaaatttggcatgctggaagggtttcaaattcaggtatgtatctatttcgtcatatcattatttattatgtaaataaatgtgaccggaaggtctaac |
1049480 |
T |
|
| Q |
313 |
catctgtgtcaacctcaattggctaagatcatcaatttttaacatagacctagaataat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1049481 |
catctgtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataat |
1049539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 1043087 - 1043454
Alignment:
| Q |
13 |
acaacaatgttcctcaaaccattgctgtcgagtattattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtctcagacactgc |
112 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1043087 |
acaacaatgttcctcaacccattgctgtcaagtattattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtttcagacactgc |
1043186 |
T |
|
| Q |
113 |
tcaaggctatccaaacacgccaggtatatggactaaagagcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttc |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
1043187 |
tcaaggctatccaaacacgccaggaatatggactaaagagcaagttgaggcgtggaaacctatcgtagatgcggttcatgacaaaggcggtatatttttc |
1043286 |
T |
|
| Q |
213 |
tgtcaaatttggcatgctggaagggtttcaaattcaggtat---gtatctatttcgtcatatcattatttattatgtaaataaa------tgtgaccgga |
303 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||| | | |||||| |||||||||||||||||||| ||||||| |||| | || |
|
|
| T |
1043287 |
tgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagttggagtgagctga |
1043386 |
T |
|
| Q |
304 |
aggtctaaccatctgtgtcaacctcaattggctaagatcatcaatttttaacatagacctagaataat |
371 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1043387 |
aggtctaaccatcaatgtcaacccaaattggttaagatcatcaatttttaacatagacctagcataat |
1043454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 45 - 271
Target Start/End: Original strand, 1032711 - 1032937
Alignment:
| Q |
45 |
tattattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtctcagacactgctcaaggctatccaaacacgccaggtatatgga |
144 |
Q |
| |
|
||||| || |||||| | || ||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
1032711 |
tattactcacagagagcatccaaaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggtatccagacacaccaggtatatgga |
1032810 |
T |
|
| Q |
145 |
ctaaagagcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaatttggcatgctggaagggtttcaaa |
244 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| ||||||| ||||| | || ||| |||||||| |||||||||| |||||| ||||| || |
|
|
| T |
1032811 |
ctaaagagcatgtcgaggcgtggaaacctattgtggatgctgttcatgccaaaggtgctacattcttctgtcagatttggcatgttggaagagtttctaa |
1032910 |
T |
|
| Q |
245 |
ttcaggtatgtatctatttcgtcatat |
271 |
Q |
| |
|
||| |||||||| |||||| |||||| |
|
|
| T |
1032911 |
ttctagtatgtatttatttcctcatat |
1032937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 1070188 - 1070378
Alignment:
| Q |
51 |
tctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtctcagacactgctcaaggctatccaaacacgccaggtatatggactaaag |
150 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||| |||||||| |||||||| || || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1070188 |
tctcaaagagcctctaaaggtggtcttctcatagccgaagctaccggtgtctctgataccgctcaaggctatccaaacacgcctggtatatggactaaag |
1070287 |
T |
|
| Q |
151 |
agcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaatttggcatgctggaagggtttc |
241 |
Q |
| |
|
|||| || || || |||||||| ||||| |||| |||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
1070288 |
agcaagtcgatgcatggaaacccattgtggatgctgttcatgacaaaggcggtgtatttttctgtcaaatttggcatgttggaagagtttc |
1070378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 257
Target Start/End: Original strand, 1052034 - 1052246
Alignment:
| Q |
45 |
tattattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtctcagacactgctcaaggctatccaaacacgccaggtatatgga |
144 |
Q |
| |
|
||||| || |||||| | || ||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
1052034 |
tattactcacagagagcatccaaaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggtatccagacacaccaggtatatgga |
1052133 |
T |
|
| Q |
145 |
ctaaagagcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaatttggcatgctggaagggtttcaaa |
244 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| ||||||| ||||| | || ||| |||||||| |||||||||| |||||| ||||| || |
|
|
| T |
1052134 |
ctaaagagcatgtcgaggcgtggaaacctattgtggatgctgttcatgccaaaggtgctacattcttctgtcagatttggcatgttggaagagtttctaa |
1052233 |
T |
|
| Q |
245 |
ttcaggtatgtat |
257 |
Q |
| |
|
||| |||||||| |
|
|
| T |
1052234 |
ttctagtatgtat |
1052246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 255
Target Start/End: Original strand, 1064895 - 1065088
Alignment:
| Q |
62 |
ctctaaaggtggtattctcatagctgaagctactggtgtctcagacactgctcaaggctatccaaacacgccaggtatatggactaaagagcatgttgag |
161 |
Q |
| |
|
|||||| || ||| |||||||| | |||||||| |||||||| ||||| |||||||| |||||| | ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
1064895 |
ctctaacggaggtcttctcataaccgaagctaccggtgtctctgacaccgctcaagggtatccagatacgccaggtatttggactaaagagcatgtcgag |
1064994 |
T |
|
| Q |
162 |
gcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaatttggcatgctggaagggtttcaaattcaggtatgt |
255 |
Q |
| |
|
|| |||||||| ||||| |||| ||||||| |||||| | || | || ||||| |||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
1064995 |
gcatggaaacccattgtggatgctgttcatgctaaaggtgctaccatcttttgtcagatttggcatgttggaagagtttctgattcaggtatgt |
1065088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 1057860 - 1058038
Alignment:
| Q |
63 |
tctaaaggtggtattctcatagctgaagctactggtgtctcagacactgctcaaggctatccaaacacgccaggtatatggactaaagagcatgttgagg |
162 |
Q |
| |
|
||||| || ||| |||||||| | |||||||| ||| | || ||||| |||||||| |||||| ||||||||||||| |||||||||||||| || |||| |
|
|
| T |
1057860 |
tctaacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggtatccagacacgccaggtatttggactaaagagcacgtcgagg |
1057959 |
T |
|
| Q |
163 |
cgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaatttggcatgctggaagggtttc |
241 |
Q |
| |
|
|||||||||||||||| |||| || |||| ||||| | || || |||||||| |||||||| | |||||| ||||| |
|
|
| T |
1057960 |
cgtggaaacctattgtggatgctgtccatgccaaaggtgctaccttcttctgtcagatttggcacgttggaagagtttc |
1058038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 1049573 - 1049641
Alignment:
| Q |
195 |
aaaggcggtatatttttctgtcaaatttggcatgctggaagggtttcaaattcaggtatgtatctattt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| ||| ||||| |
|
|
| T |
1049573 |
aaaggcggtatatttttctgtcaaatttggcatgttggaagagtttcaaattcagctatttatttattt |
1049641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 253
Target Start/End: Complemental strand, 1641864 - 1641731
Alignment:
| Q |
120 |
tatccaaacacgccaggtatatggactaaagagcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaa |
219 |
Q |
| |
|
||||||||||| ||||| || |||| ||||| || ||||| | |||||||| ||| || |||| ||||||| |||| |||||||| || ||||| | |
|
|
| T |
1641864 |
tatccaaacacaccaggcatttggagaaaagatcaagttgaaacttggaaacccattatagatgctgttcatgccaaagaaggtatattcttttgtcaga |
1641765 |
T |
|
| Q |
220 |
tttggcatgctggaagggtttcaaattcaggtat |
253 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
1641764 |
tttggcatggtggaagggcttctaattcaggtat |
1641731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 1045880 - 1046010
Alignment:
| Q |
124 |
caaacacgccaggtatatggactaaagagcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaatttg |
223 |
Q |
| |
|
||||||| || || |||||||| |||||||| || || |||||||||||||| || |||| ||||||| ||||| | || ||| ||| ||||||||| |
|
|
| T |
1045880 |
caaacacacctggcatatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttg |
1045979 |
T |
|
| Q |
224 |
gcatgctggaagggtttcaaattcaggtatg |
254 |
Q |
| |
|
|| || ||| |||||||| ||||| |||||| |
|
|
| T |
1045980 |
gcttgttggtagggtttctaattctggtatg |
1046010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 1045734 - 1045791
Alignment:
| Q |
61 |
cctctaaaggtggtattctcatagctgaagctactggtgtctcagacactgctcaagg |
118 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||| || ||||| || ||||||||||| |
|
|
| T |
1045734 |
cctctgaaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagg |
1045791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University