View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14371_high_8 (Length: 281)
Name: NF14371_high_8
Description: NF14371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14371_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 14634835 - 14635039
Alignment:
| Q |
71 |
ttactagtcgagctacactcatctaggcggaattcattacacttatgcattgtgcaaaactattatacttgtgcaaattaaacaaattatattttccact |
170 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| || |
|
|
| T |
14634835 |
ttacaagtcgagctacactcatttaggctaaattcattacacttatgcattgtgaaaaactattatacttgtgcaaattagacaaattatgttttccgct |
14634934 |
T |
|
| Q |
171 |
tttctattctatttaactctatatataatttatagcactttgataatttgttaacggtttttcccttccctcatgcttattgttttaaacttttgtagat |
270 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| |||||||| | |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
14634935 |
ttgctattctatttaaccgtatatataatttattgcactttgtttatttgttaacagtttttcccctccctcatgcttattgttttaaaattttgtagat |
14635034 |
T |
|
| Q |
271 |
aatgt |
275 |
Q |
| |
|
||||| |
|
|
| T |
14635035 |
aatgt |
14635039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 14639928 - 14640132
Alignment:
| Q |
71 |
ttactagtcgagctacactcatctaggcggaattcattacacttatgcattgtgcaaaactattatacttgtgcaaattaaacaaattatattttccact |
170 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||| |||||| || |
|
|
| T |
14639928 |
ttacaagtcgagctacactcatttaggctaaattcattacacttatgcaccgtgaaaaactaatatacttgtgcaaattagacaaattatgttttccgct |
14640027 |
T |
|
| Q |
171 |
tttctattctatttaactctatatataatttatagcactttgataatttgttaacggtttttcccttccctcatgcttattgttttaaacttttgtagat |
270 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||| |||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14640028 |
ttgctattctatttaaccgtatacataatttattgcactttgtttatttgttaacagtttttcccctccctcatgcttattgttttaaacttttgtagat |
14640127 |
T |
|
| Q |
271 |
aatgt |
275 |
Q |
| |
|
||||| |
|
|
| T |
14640128 |
aatgt |
14640132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 14634765 - 14634802
Alignment:
| Q |
33 |
ttttaaggcaattaagggggtgtgcggggttcaaacct |
70 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
14634765 |
ttttaaggcaaataagggggtgtgcggggttcgaacct |
14634802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University