View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14371_low_17 (Length: 212)

Name: NF14371_low_17
Description: NF14371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14371_low_17
NF14371_low_17
[»] chr7 (2 HSPs)
chr7 (76-199)||(45399156-45399279)
chr7 (38-92)||(44420265-44420319)
[»] chr6 (1 HSPs)
chr6 (38-92)||(19378243-19378297)
[»] chr4 (1 HSPs)
chr4 (80-164)||(47759284-47759368)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 45399279 - 45399156
Alignment:
Q  76 gtgatgttggatttggttagcttgagagtgaagttgtaaaaagagtgacaaaacggaggttggagcatgaaagagggagaagagaagcttgtgtaatgat 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45399279 gtgatgttggatttggttagcttgagagtgaagttgtaaaaagagtgacaaaacggaggttggaccatgaaagagggagaagagaagcttgtgtaatgat 45399180  T
Q  176 gatatgggtttgaaagtgcagtga 199  Q
    ||||||||||||||||||||||||    
T  45399179 gatatgggtttgaaagtgcagtga 45399156  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 44420265 - 44420319
Alignment:
Q  38 aatttagtgttgttgatggtgataatgatgatgagattgtgatgttggatttggt 92  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44420265 aatttagtgttgttgatggtgataaagatgatgagattgtgatgttggatttggt 44420319  T

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Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 19378243 - 19378297
Alignment:
Q  38 aatttagtgttgttgatggtgataatgatgatgagattgtgatgttggatttggt 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19378243 aatttagtgttgttgatggtgataatgatgatgagattgtgatgttggatttggt 19378297  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 47759368 - 47759284
Alignment:
Q  80 tgttggatttggttagcttgagagtgaagttgtaaaaagagtgacaaaacggaggttggagcatgaaagagggagaagagaagct 164  Q
    ||||||||||||||||||||||||||| |  ||  | |||||||| ||| |||||||||| | ||||||||||||||||||||||    
T  47759368 tgttggatttggttagcttgagagtgaggcggtgcagagagtgacgaaaaggaggttggaacgtgaaagagggagaagagaagct 47759284  T

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