View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14371_low_4 (Length: 432)

Name: NF14371_low_4
Description: NF14371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14371_low_4
NF14371_low_4
[»] chr1 (11 HSPs)
chr1 (1-280)||(31032929-31033206)
chr1 (281-413)||(30950922-30951054)
chr1 (273-413)||(29799166-29799305)
chr1 (305-405)||(23614402-23614502)
chr1 (313-407)||(47367639-47367732)
chr1 (306-405)||(21972199-21972298)
chr1 (305-405)||(11142442-11142541)
chr1 (369-412)||(19313217-19313260)
chr1 (369-404)||(44960909-44960944)
chr1 (322-416)||(10989465-10989559)
chr1 (371-405)||(29357169-29357203)
[»] chr6 (8 HSPs)
chr6 (280-413)||(1780756-1780889)
chr6 (303-411)||(29486224-29486332)
chr6 (306-405)||(904253-904352)
chr6 (304-408)||(22956662-22956766)
chr6 (304-408)||(23831626-23831730)
chr6 (306-408)||(33224522-33224624)
chr6 (305-343)||(27673842-27673880)
chr6 (357-413)||(24428622-24428678)
[»] chr7 (12 HSPs)
chr7 (281-413)||(25439674-25439806)
chr7 (281-413)||(13465310-13465442)
chr7 (281-413)||(28491167-28491299)
chr7 (365-411)||(29716051-29716097)
chr7 (303-411)||(37202571-37202678)
chr7 (317-413)||(25591918-25592014)
chr7 (371-411)||(27097050-27097090)
chr7 (371-411)||(27181213-27181253)
chr7 (280-416)||(40253862-40253998)
chr7 (306-405)||(45855342-45855441)
chr7 (373-411)||(20927083-20927121)
chr7 (364-413)||(34658929-34658978)
[»] chr3 (7 HSPs)
chr3 (280-413)||(40763664-40763797)
chr3 (281-413)||(20843300-20843432)
chr3 (280-395)||(3458209-3458324)
chr3 (305-405)||(16152063-16152163)
chr3 (364-410)||(11033972-11034018)
chr3 (306-408)||(19795412-19795514)
chr3 (371-411)||(29123428-29123468)
[»] chr8 (7 HSPs)
chr8 (281-413)||(12491418-12491550)
chr8 (281-413)||(6115152-6115284)
chr8 (281-411)||(32415644-32415774)
chr8 (304-405)||(41570189-41570290)
chr8 (371-411)||(5808867-5808907)
chr8 (377-413)||(38173003-38173039)
chr8 (350-404)||(1233786-1233840)
[»] chr2 (12 HSPs)
chr2 (281-413)||(16546206-16546338)
chr2 (292-413)||(45656059-45656180)
chr2 (282-397)||(39070355-39070459)
chr2 (278-408)||(26180406-26180535)
chr2 (18-104)||(30760458-30760544)
chr2 (12-109)||(13534994-13535092)
chr2 (280-416)||(8230394-8230531)
chr2 (38-105)||(30758317-30758384)
chr2 (281-416)||(35524931-35525066)
chr2 (370-411)||(37614532-37614573)
chr2 (357-413)||(42799363-42799420)
chr2 (305-401)||(4435024-4435120)
[»] chr4 (10 HSPs)
chr4 (281-413)||(22785880-22786012)
chr4 (292-413)||(6016923-6017044)
chr4 (292-413)||(2407018-2407139)
chr4 (305-405)||(48861760-48861860)
chr4 (312-407)||(48840949-48841043)
chr4 (281-416)||(8762847-8762982)
chr4 (364-413)||(52628100-52628149)
chr4 (350-405)||(16608607-16608662)
chr4 (306-413)||(21790525-21790631)
chr4 (371-413)||(54166174-54166216)
[»] scaffold0795 (1 HSPs)
scaffold0795 (2-150)||(5044-5190)
[»] chr5 (6 HSPs)
chr5 (292-413)||(40528271-40528392)
chr5 (292-413)||(16908860-16908979)
chr5 (305-408)||(34033839-34033942)
chr5 (276-416)||(3498702-3498842)
chr5 (364-408)||(22098943-22098987)
chr5 (281-331)||(7008761-7008811)
[»] scaffold0361 (1 HSPs)
scaffold0361 (294-411)||(6917-7033)
[»] scaffold0481 (1 HSPs)
scaffold0481 (365-411)||(6516-6562)
[»] scaffold0110 (1 HSPs)
scaffold0110 (372-413)||(7118-7159)
[»] scaffold0271 (1 HSPs)
scaffold0271 (321-411)||(20141-20231)
[»] scaffold0002 (1 HSPs)
scaffold0002 (371-413)||(428569-428611)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 31033206 - 31032929
Alignment:
Q  1 tcaattctaaattttttccatggggtgatgtcctctcggagaaggtcgaatgtgattatctctaataatgttaatggtgttcagatcgagggtgtggaag 100  Q
    |||||||||||||||| ||| ||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  31033206 tcaattctaaattttt-ccacgggatgatgtcctctcagagaaggttgaatgcgattatctctaataatgttaatggtgttcatatcgagggtgtggaag 31033108  T
Q  101 gggtgaggaacgcaatgtttcaacatttttcagtcacattttatagaggtaatgttgtctagatcagatgtagggaatatatcctttaaaacaatttcta 200  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||    
T  31033107 gggtgaggaacacaatatttcaacatttt-cagtcacattttatagaggtaatgttgtctagatcaggtgtaggggatctatcctttaaaacaatttcta 31033009  T
Q  201 tggaggatggagctaatcttattagaccttttctgttgaaagagattaaggcataggtgtgggattgtgacagttacaag 280  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31033008 tggagaatggagctaatcttattagaccttttgtgttgaaagagattaaggcataggtgtgggattgtgacagttacaag 31032929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 30951054 - 30950922
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30951054 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcgagtaccccaa 30950955  T
Q  381 ataataaacattgagctaccccaaacaaattca 413  Q
    ||||||||||||||||  |||||||||||||||    
T  30950954 ataataaacattgagcatccccaaacaaattca 30950922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 273 - 413
Target Start/End: Complemental strand, 29799305 - 29799166
Alignment:
Q  273 gttacaagcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggc 372  Q
    |||| ||||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||| |||||||||    
T  29799305 gttaaaagcaggggcgtagcccttcattggcaaggggtagccttggctaccc-aaaaaatatattaatctttaattggttggtataaatttatattcggc 29799207  T
Q  373 taccccaaataataaacattgagctaccccaaacaaattca 413  Q
    ||||||||||||||||||||||| ||| ||||| |||||||    
T  29799206 taccccaaataataaacattgagttactccaaataaattca 29799166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 405
Target Start/End: Original strand, 23614402 - 23614502
Alignment:
Q  305 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 404  Q
    |||||||||||||||||||||||||||  ||||| |||| ||| | | ||| || ||| |||| ||||||||| |||||||||||||||||||||| |||    
T  23614402 aggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctaccctaaataataaacattgagctacctcaa 23614501  T
Q  405 a 405  Q
    |    
T  23614502 a 23614502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 407
Target Start/End: Original strand, 47367639 - 47367732
Alignment:
Q  313 ccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaaca 407  Q
    |||||||||||||||||||||| ||| | || ||| ||||||| |  ||| |||||  |||||| ||||||||||||||||||||||||||||||    
T  47367639 ccttggctaccccaaaaaatat-ttattgttgaattagttggtatgtatttatattttgctacctcaaataataaacattgagctaccccaaaca 47367732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 405
Target Start/End: Original strand, 21972199 - 21972298
Alignment:
Q  306 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 405  Q
    ||||||||||| |||||||||||||||| |||| |||| |||  |||| | |||| | | |||   ||||||||||||||||| ||||||||||||||||    
T  21972199 ggggtagcctttgctaccccaaaaaataaattattcttgaattggttgatataaaattacatttaactaccccaaataataaatattgagctaccccaaa 21972298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 405
Target Start/End: Original strand, 11142442 - 11142541
Alignment:
Q  305 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 404  Q
    ||||||||||||||||||||||||||| ||||||  ||| ||   || ||| |  | | ||||||||||||| |||||||||||||||||||||| ||||    
T  11142442 aggggtagccttggctaccccaaaaaa-atattatacttaaagtggtcggtatgtacttatattcggctacctcaaataataaacattgagctactccaa 11142540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 412
Target Start/End: Original strand, 19313217 - 19313260
Alignment:
Q  369 cggctaccccaaataataaacattgagctaccccaaacaaattc 412  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  19313217 cggctaccccaaataataaatattgagctaccccaaacacattc 19313260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 44960909 - 44960944
Alignment:
Q  369 cggctaccccaaataataaacattgagctaccccaa 404  Q
    |||||||||||||||||||| |||||||||||||||    
T  44960909 cggctaccccaaataataaagattgagctaccccaa 44960944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 416
Target Start/End: Complemental strand, 10989559 - 10989465
Alignment:
Q  322 ccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattcattt 416  Q
    ||||||||||  ||||| |||| |||| |||||| |   || |||||  |||||||||||||| ||| ||| |||||||||||||||||| ||||    
T  10989559 ccccaaaaaaagtattattcttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctaccccaaacaaatttattt 10989465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Original strand, 29357169 - 29357203
Alignment:
Q  371 gctaccccaaataataaacattgagctaccccaaa 405  Q
    |||||||||||||||||| ||||||||||||||||    
T  29357169 gctaccccaaataataaatattgagctaccccaaa 29357203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 280 - 413
Target Start/End: Complemental strand, 1780889 - 1780756
Alignment:
Q  280 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 379  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1780889 gcaggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaatgagttggtgtaaattaatattcggctacccca 1780790  T
Q  380 aataataaacattgagctaccccaaacaaattca 413  Q
     |||||||||||||||||||||||||||||||||    
T  1780789 tataataaacattgagctaccccaaacaaattca 1780756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 411
Target Start/End: Original strand, 29486224 - 29486332
Alignment:
Q  303 caaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccc 402  Q
    ||||||||||||||||||||||||||||||||| || |||| |||   ||||| |||| | ||||  ||||||| |||||||||||||| ||||||  ||    
T  29486224 caaggggtagccttggctaccccaaaaaatatactattcttcaattgtttggtataaaattatatctggctacctcaaataataaacatcgagctattcc 29486323  T
Q  403 aaacaaatt 411  Q
    ||| |||||    
T  29486324 aaataaatt 29486332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 405
Target Start/End: Complemental strand, 904352 - 904253
Alignment:
Q  306 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 405  Q
    ||||||||||| |||||||||||||||| |||| |||| |||  |||| | |||| | | |||  |||||||||||||||||| ||||||||||||||||    
T  904352 ggggtagcctttgctaccccaaaaaataaattattcttgaattggttgatataaaattacatttagctaccccaaataataaatattgagctaccccaaa 904253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 22956766 - 22956662
Alignment:
Q  304 aaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccca 403  Q
    ||||||||| ||||||||||| ||||||   |||| ||||  || ||||||| |  ||  |||| | |||||||||||||||||| ||||||||||||||    
T  22956766 aaggggtagtcttggctacccaaaaaaaataattattcttgtattagttggtatgtatctatatccagctaccccaaataataaaaattgagctacccca 22956667  T
Q  404 aacaa 408  Q
    |||||    
T  22956666 aacaa 22956662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 408
Target Start/End: Original strand, 23831626 - 23831730
Alignment:
Q  304 aaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccca 403  Q
    ||||||||| ||||||||||| ||||||   |||| ||||  || ||||||| |  ||  |||| | |||||||||||||||||| ||||||||||||||    
T  23831626 aaggggtagtcttggctacccaaaaaaaataattattcttgtattagttggtatgtatctatatccagctaccccaaataataaaaattgagctacccca 23831725  T
Q  404 aacaa 408  Q
    |||||    
T  23831726 aacaa 23831730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 33224522 - 33224624
Alignment:
Q  306 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 405  Q
    ||||||||| | |||||||||||| | | | || |||| |||  |||||| || ||| |||||  |||||||||||||||||| |||||||||||| |||    
T  33224522 ggggtagcccttgctaccccaaaataaaaaatattcttaaattggttggtatatatttatatttagctaccccaaataataaatattgagctaccctaaa 33224621  T
Q  406 caa 408  Q
    |||    
T  33224622 caa 33224624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 27673842 - 27673880
Alignment:
Q  305 aggggtagccttggctaccccaaaaaatatattaatctt 343  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  27673842 aggggtagccttggctaccccaaaaaaaatattattctt 27673880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 24428622 - 24428678
Alignment:
Q  357 taaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattca 413  Q
    |||||| |||| ||| ||||| ||||||||||||||||  ||||| |||||||||||    
T  24428622 taaatttatatccggttaccctaaataataaacattgaattaccctaaacaaattca 24428678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 25439806 - 25439674
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25439806 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 25439707  T
Q  381 ataataaacattgagctaccccaaacaaattca 413  Q
    |||||||| ||||||||||||| ||||||||||    
T  25439706 ataataaatattgagctaccccgaacaaattca 25439674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 13465310 - 13465442
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13465310 caggggtgcaacccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 13465409  T
Q  381 ataataaacattgagctaccccaaacaaattca 413  Q
    ||||| ||||||||||||||| |||||||||||    
T  13465410 ataattaacattgagctaccctaaacaaattca 13465442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 28491167 - 28491299
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  28491167 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattgatactcggctaccccaa 28491266  T
Q  381 ataataaacattgagctaccccaaacaaattca 413  Q
    |||||||||||||||||| ||||||||||||||    
T  28491267 ataataaacattgagctatcccaaacaaattca 28491299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 29716097 - 29716051
Alignment:
Q  365 tattcggctaccccaaataataaacattgagctaccccaaacaaatt 411  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  29716097 tattcggctaccccaaataataaatattgagctaccccaaacaaatt 29716051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 411
Target Start/End: Original strand, 37202571 - 37202678
Alignment:
Q  303 caaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccc 402  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||  |||||| || ||| |||| | ||| |||||||||||||| ||| ||| | | |    
T  37202571 caaggggtagccttggctaccc-aaaaaatatattattcttcaattggttggtatatatttatatcctgctgccccaaataataaatattaagccatctc 37202669  T
Q  403 aaacaaatt 411  Q
    |||||||||    
T  37202670 aaacaaatt 37202678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 25591918 - 25592014
Alignment:
Q  317 ggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaattca 413  Q
    ||||||||||||||| |||||| ||||  || ||||||| |  ||  |||| | |||||||||||||||||| |||||||||| |||||||| ||||    
T  25591918 ggctaccccaaaaaaaatattattcttgtattagttggtatgtatctatatccagctaccccaaataataaatattgagctactccaaacaagttca 25592014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 27097050 - 27097090
Alignment:
Q  371 gctaccccaaataataaacattgagctaccccaaacaaatt 411  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  27097050 gctaccccaaataataaatattgagctaccccaaacaaatt 27097090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 27181253 - 27181213
Alignment:
Q  371 gctaccccaaataataaacattgagctaccccaaacaaatt 411  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  27181253 gctaccccaaataataaatattgagctaccccaaacaaatt 27181213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 416
Target Start/End: Complemental strand, 40253998 - 40253862
Alignment:
Q  280 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 379  Q
    |||||||||  ||||||||||  || | ||||||| |||||||||||||||| |||||  |||| |||| |||||| |   || |||||  |||| ||||    
T  40253998 gcaggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaaatattgttcttgaatatgttggtatgtttttatatttagctatccca 40253899  T
Q  380 aataataaacattgagctaccccaaacaaattcattt 416  Q
    ||||| ||| ||| |||||||||||| ||||| ||||    
T  40253898 aataaaaaatatttagctaccccaaataaatttattt 40253862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 405
Target Start/End: Original strand, 45855342 - 45855441
Alignment:
Q  306 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 405  Q
    ||||||||| | |||||||||||| | | | || |||| |||  || ||| || ||| |||||  |||||||||||||||||| ||||||||||||||||    
T  45855342 ggggtagcccttgctaccccaaaagaaaaaatattcttgaattggtcggtatatatttatatttagctaccccaaataataaatattgagctaccccaaa 45855441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 20927121 - 20927083
Alignment:
Q  373 taccccaaataataaacattgagctaccccaaacaaatt 411  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  20927121 taccccaaataataaatattgagctaccccaaataaatt 20927083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 34658929 - 34658978
Alignment:
Q  364 atattcggctaccccaaataataaacattgagctaccccaaacaaattca 413  Q
    |||||| ||||||| |||||||| |||||||||||| |||||||| ||||    
T  34658929 atattccgctaccctaaataatatacattgagctactccaaacaagttca 34658978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 280 - 413
Target Start/End: Original strand, 40763664 - 40763797
Alignment:
Q  280 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 379  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40763664 gcaggggcgcaacccttcattgacaagaggtagccttggttaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 40763763  T
Q  380 aataataaacattgagctaccccaaacaaattca 413  Q
    ||||||||||||||||||| ||||||||||||||    
T  40763764 aataataaacattgagctatcccaaacaaattca 40763797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 20843432 - 20843300
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||||| || ||||||||||||||    
T  20843432 caggggcgtagccctttattggcaaggggtagccttggctaccccaaaaaatatattaatatttaattggttggtataaatttattttcggctaccccaa 20843333  T
Q  381 ataataaacattgagctaccccaaacaaattca 413  Q
    |||||||||||||||||||||||||||||||||    
T  20843332 ataataaacattgagctaccccaaacaaattca 20843300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 280 - 395
Target Start/End: Complemental strand, 3458324 - 3458209
Alignment:
Q  280 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctacccca 379  Q
    ||||||||| | |||||||||| |||  ||||||||||||||||| ||||||||||||||||||||||   ||||| |||||| ||||||||||||||||    
T  3458324 gcaggggcgtagcccttcattggcaacaggtagccttggctacccaaaaaaatatattaatctttaattgtttggtctaaatttatattcggctacccca 3458225  T
Q  380 aataataaacattgag 395  Q
     |||||||| ||||||    
T  3458224 tataataaatattgag 3458209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 405
Target Start/End: Original strand, 16152063 - 16152163
Alignment:
Q  305 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 404  Q
    |||||||||||||||||||||||||||  ||||| |||| ||| | | ||| || ||| |||| ||||||||||||||||||||||||||||||||||||    
T  16152063 aggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctaccccaaataataaacattgagctaccccaa 16152162  T
Q  405 a 405  Q
    |    
T  16152163 a 16152163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 11034018 - 11033972
Alignment:
Q  364 atattcggctaccccaaataataaacattgagctaccccaaacaaat 410  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||||    
T  11034018 atatccggttacctcaaataataaacattgagctaccccaaacaaat 11033972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 19795412 - 19795514
Alignment:
Q  306 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 405  Q
    ||||||||| | |||||||||||| | | | || |||| |||  |||||| || ||| |||||  ||||| |||||||||||| ||||||||||||||||    
T  19795412 ggggtagcccttgctaccccaaaataaaaaatattcttgaattggttggtatatatttatatttagctactccaaataataaatattgagctaccccaaa 19795511  T
Q  406 caa 408  Q
    |||    
T  19795512 caa 19795514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 29123428 - 29123468
Alignment:
Q  371 gctaccccaaataataaacattgagctaccccaaacaaatt 411  Q
    |||||||||||||||||| ||||||||| |||||| |||||    
T  29123428 gctaccccaaataataaatattgagctatcccaaataaatt 29123468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 12491418 - 12491550
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12491418 caggggcgcaacccttcattgacaaggggtagccttggctactccaaaaaatatattaatctttaataagttggtgcaaattaatattcggctaccccaa 12491517  T
Q  381 ataataaacattgagctaccccaaacaaattca 413  Q
    |||| |||||||||||| |||||||||||||||    
T  12491518 ataacaaacattgagctgccccaaacaaattca 12491550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 6115284 - 6115152
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||||| |||| ||||||   |||||||||||||||||||||||||||| |||||| ||||  || ||||||| |  ||  |||| | ||||||  ||    
T  6115284 caggggcgtatcctttcattaggaaggggtagccttggctaccccaaaaaaaatattattcttgtattagttggtatgtatctatatccagctaccataa 6115185  T
Q  381 ataataaacattgagctaccccaaacaaattca 413  Q
    |||||||||||||| ||||||||||||| ||||    
T  6115184 ataataaacattgaactaccccaaacaagttca 6115152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 411
Target Start/End: Original strand, 32415644 - 32415774
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||||| | |||||||  ||||||||||| | |||||||||| ||||||||||||| |||| |||  |||||| |||| | ||||  ||| |||  ||    
T  32415644 caggggcgtagcccttcaacgacaaggggtaactttggctacccaaaaaaatatattattcttcaattggttggtataaacttatatctggcaaccttaa 32415743  T
Q  381 ataataaacattgagctaccccaaacaaatt 411  Q
    ||||||||||||||| ||||||||| |||||    
T  32415744 ataataaacattgagttaccccaaataaatt 32415774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 41570189 - 41570290
Alignment:
Q  304 aaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctacccca 403  Q
    |||||||||||||||||||||||||||  |||||  |||| | |  || ||| |  ||| |||||| |||||||||||||||||| ||||||||||||||    
T  41570189 aaggggtagccttggctaccccaaaaacaatatttttcttgagttggtaggtatgtatttatattcagctaccccaaataataaatattgagctacccca 41570288  T
Q  404 aa 405  Q
    ||    
T  41570289 aa 41570290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 5808907 - 5808867
Alignment:
Q  371 gctaccccaaataataaacattgagctaccccaaacaaatt 411  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  5808907 gctaccccaaataataaatattgagctaccccaaataaatt 5808867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 38173039 - 38173003
Alignment:
Q  377 ccaaataataaacattgagctaccccaaacaaattca 413  Q
    |||||||||||||||||||||||||||||||| ||||    
T  38173039 ccaaataataaacattgagctaccccaaacaagttca 38173003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 1233840 - 1233786
Alignment:
Q  350 gttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 404  Q
    |||||| || ||| |||||  |||||||||||||||||| |||||||||||||||    
T  1233840 gttggtatatatttatatttagctaccccaaataataaatattgagctaccccaa 1233786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 16546206 - 16546338
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  16546206 caggggcgcaactcttcattgacaagggttagccttggctaccccaaaaaatatattaaactttaataagttggtgtaaatttatattcggctaccccaa 16546305  T
Q  381 ataataaacattgagctaccccaaacaaattca 413  Q
    ||||||||||||||||||||| |||||||||||    
T  16546306 ataataaacattgagctaccctaaacaaattca 16546338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 45656180 - 45656059
Alignment:
Q  292 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 391  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||||| || |||||||||||||||||||||| ||    
T  45656180 cccttcattggcaaggggtagccttggctaccccaaaaaatatattaatttttaattggttggtataaatttattttcggctaccccaaataataaatat 45656081  T
Q  392 tgagctaccccaaacaaattca 413  Q
    ||||||||||||||||||||||    
T  45656080 tgagctaccccaaacaaattca 45656059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 282 - 397
Target Start/End: Complemental strand, 39070459 - 39070355
Alignment:
Q  282 aggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaa 381  Q
    ||||||||| |||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  39070459 aggggcgcagcccttcattgacaaggggtag-----------ccaaaaaatatattaatctttaataagttggtgtaaatttatattcggctacctcaaa 39070371  T
Q  382 taataaacattgagct 397  Q
    ||||||||||||||||    
T  39070370 taataaacattgagct 39070355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 408
Target Start/End: Original strand, 26180406 - 26180535
Alignment:
Q  278 aagcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccc 377  Q
    ||||||||||| | ||||||||  |||||| ||||||||||||| |||||||||||||||||| || ||| ||||||| |  ||| ||||   |||||      
T  26180406 aagcaggggcgtagcccttcatatacaaggagtagccttggcta-cccaaaaaatatattaattttgaattagttggtatgtatttatatctagctactt 26180504  T
Q  378 caaataataaacattgagctaccccaaacaa 408  Q
    ||||||||||| ||||||||||| |||||||    
T  26180505 caaataataaatattgagctacctcaaacaa 26180535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 30760544 - 30760458
Alignment:
Q  18 ccatggggtgatgtcctctcggagaaggtcgaatgtgattatctctaataatgttaatggtgttcagatcgagggtgtggaaggggt 104  Q
    |||||| |||||||| | |||||||||||| ||||| ||||| |||| |||||| |||||||||||| | |||||||||||||||||    
T  30760544 ccatggagtgatgtcttttcggagaaggtcaaatgtcattatttctattaatgtaaatggtgttcaggtagagggtgtggaaggggt 30760458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 13535092 - 13534994
Alignment:
Q  12 ttttttccatggggtgatgtcctctcggagaagg-tcgaatgtgattatctctaataatgttaatggtgttcagatcgagggtgtggaaggggtgagga 109  Q
    |||||||||||||||| |||| ||| ||||| || || | ||||||||| |||| ||||||||| |||||||||||  ||||||||||||||| |||||    
T  13535092 ttttttccatggggtggtgtcttctaggagacgggtcaactgtgattatttctattaatgttaaaggtgttcagattaagggtgtggaaggggcgagga 13534994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 416
Target Start/End: Complemental strand, 8230531 - 8230394
Alignment:
Q  280 gcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaata-tattaatctttaataagttggtgtaaattaatattcggctacccc 378  Q
    |||||||||  ||||||||||  || | ||||||| |||||||||||||||| | ||||| |||| |||| |||||| |   || |||||  ||||||||    
T  8230531 gcaggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaaagtattattcttgaatatgttggtatgtttttatatttagctacccc 8230432  T
Q  379 aaataataaacattgagctaccccaaacaaattcattt 416  Q
    |||||| ||| ||| |||||||||||||||||| ||||    
T  8230431 aaataaaaaatatttagctaccccaaacaaatttattt 8230394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 30758384 - 30758317
Alignment:
Q  38 ggagaaggtcgaatgtgattatctctaataatgttaatggtgttcagatcgagggtgtggaaggggtg 105  Q
    |||||||||| ||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||||    
T  30758384 ggagaaggtcaaatgtcattatttctattaatgtaaatggtgttcaggtagagggtgtggaaggggtg 30758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 416
Target Start/End: Complemental strand, 35525066 - 35524931
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    ||||||||  ||||||||||  || | ||||||| ||||||||||||||||  ||||  |||| |||| |||||| |   || |||||  ||||||||||    
T  35525066 caggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaattatttttcttgaatatgttggtatgtttttatatttagctaccccaa 35524967  T
Q  381 ataataaacattgagctaccccaaacaaattcattt 416  Q
    |||| ||| ||| |||||||||||| ||||| ||||    
T  35524966 ataaaaaatatttagctaccccaaataaatttattt 35524931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 37614532 - 37614573
Alignment:
Q  370 ggctaccccaaataataaacattgagctaccccaaacaaatt 411  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  37614532 ggctaccccaaataataaacattgagccaccccaagcaaatt 37614573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 42799420 - 42799363
Alignment:
Q  357 taaattaatattcggctacccc-aaataataaacattgagctaccccaaacaaattca 413  Q
    |||||| |||||| |||||||| |||||||||||||| |||||| |||||||||||||    
T  42799420 taaatttatattcagctacccccaaataataaacattcagctacaccaaacaaattca 42799363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 401
Target Start/End: Original strand, 4435024 - 4435120
Alignment:
Q  305 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccc 401  Q
    ||||||||||  |||||||| ||||||||||||| |||| |||  || ||| |  ||| |||| ||| ||||  |||||||||||||||| ||||||    
T  4435024 aggggtagccaaggctacccaaaaaaatatattattcttgaattggtcggtatgtatttatatccggttaccttaaataataaacattgaactaccc 4435120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 22785880 - 22786012
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| || ||||||||||||||    
T  22785880 caggggcgtagcccttcattggcaaggggtagccttggctaccccaaaaaatatattaatctttaattggttggtataaatttattttcggctaccccaa 22785979  T
Q  381 ataataaacattgagctaccccaaacaaattca 413  Q
    |||||||||||||||||||||||||||||||||    
T  22785980 ataataaacattgagctaccccaaacaaattca 22786012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 6017044 - 6016923
Alignment:
Q  292 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 391  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||||| |||||| || || ||||||||||||||||||||||    
T  6017044 cccttcattggcaaggggtagccttggctaccccaaaaattatattaatctttaattggttggtataaatttatttttggctaccccaaataataaacat 6016945  T
Q  392 tgagctaccccaaacaaattca 413  Q
    ||||||||||||||||||||||    
T  6016944 tgagctaccccaaacaaattca 6016923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 292 - 413
Target Start/End: Original strand, 2407018 - 2407139
Alignment:
Q  292 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 391  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||| |||||| || ||| |||||||||||||||||||||    
T  2407018 cccttcattggcaaggggtagccttggctacctcaaaaaatatattaatctttaattggttggtataaatttattttcagctaccccaaataataaacat 2407117  T
Q  392 tgagctaccccaaacaaattca 413  Q
    |||||||||||||  |||||||    
T  2407118 tgagctaccccaactaaattca 2407139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 405
Target Start/End: Original strand, 48861760 - 48861860
Alignment:
Q  305 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 404  Q
    |||||||||||||||||||||||||||  ||||| |||| ||| | | ||| || ||| ||||||||||||||||||||||||||||| |||||||||||    
T  48861760 aggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatattcggctaccccaaataataaacattaagctaccccaa 48861859  T
Q  405 a 405  Q
    |    
T  48861860 a 48861860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 48840949 - 48841043
Alignment:
Q  312 gccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaaca 407  Q
    |||||||||||||||||||| | |||| ||||||||  || ||| |  ||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  48840949 gccttggctaccccaaaaaaaa-attattctttaattcgtcggtatgtatttatatccggctaccctaaataataaacattgagctaccccaaaca 48841043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 416
Target Start/End: Complemental strand, 8762982 - 8762847
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaa 380  Q
    ||||||||  ||||||||||  || | ||||||| ||||||||||||||||  ||||  |||| |||| |||||| ||  || |||||  ||||||||||    
T  8762982 caggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaagtattgttcttgaatatgttggtatatttttatatttagctaccccaa 8762883  T
Q  381 ataataaacattgagctaccccaaacaaattcattt 416  Q
    |||| ||| ||| |||||||||||| ||||| ||||    
T  8762882 ataaaaaatatttagctaccccaaataaatttattt 8762847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 52628100 - 52628149
Alignment:
Q  364 atattcggctaccccaaataataaacattgagctaccccaaacaaattca 413  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| ||||    
T  52628100 atatccggctacctcaaataataaacattgagctaccccaaacaagttca 52628149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 405
Target Start/End: Complemental strand, 16608662 - 16608607
Alignment:
Q  350 gttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 405  Q
    |||||| || ||| |||||  |||||||||||||||||| ||||||||||||||||    
T  16608662 gttggtatatatttatatttagctaccccaaataataaatattgagctaccccaaa 16608607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 413
Target Start/End: Original strand, 21790525 - 21790631
Alignment:
Q  306 ggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaa 405  Q
    |||||||||| || || |||||||||||||||| |||| ||  ||||| | |||||| ||||||  |||||| |||||||||| ||||||| |||  |||    
T  21790525 ggggtagcct-ggttatcccaaaaaatatattattcttcaaatagttgttataaatttatattcaactaccctaaataataaatattgagccaccataaa 21790623  T
Q  406 caaattca 413  Q
     |||||||    
T  21790624 taaattca 21790631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 54166216 - 54166174
Alignment:
Q  371 gctaccccaaataataaacattgagctaccccaaacaaattca 413  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||    
T  54166216 gctatcccaaataataaacattgagctacctcaaacaagttca 54166174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 5044 - 5190
Alignment:
Q  2 caattctaaattttttccatggggtgatgtcctctcggagaaggtcgaatgtgattatctctaataatgttaatggtgttcagatcgagggtgtggaagg 101  Q
    ||||||||||||||  ||| ||||||||||||||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||| |||||| |||||||    
T  5044 caattctaaatttta-ccacggggtgatgtcctctaggagaaggttgaacgtgattatctcgattaatgttaatggtgttcagattgagggtttggaagg 5142  T
Q  102 ggtgaggaacgcaatgtttcaacatttttcagtcacattttatagaggt 150  Q
    ||||||||| ||| ||||||||||  |||||||| ||||||| ||||||    
T  5143 ggtgaggaatgcagtgtttcaaca-ctttcagtctcattttaaagaggt 5190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 40528392 - 40528271
Alignment:
Q  292 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 391  Q
    |||||||||| |||||| ||| ||||||||||  ||||||||||||||||||||||  |||||| |||||| ||||||| ||| || |||||||||||||    
T  40528392 cccttcattggcaagggatagtcttggctaccttaaaaaatatattaatctttaattggttggtataaatttatattcgactatcctaaataataaacat 40528293  T
Q  392 tgagctaccccaaacaaattca 413  Q
    ||||||||||||| ||||||||    
T  40528292 tgagctaccccaagcaaattca 40528271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 16908979 - 16908860
Alignment:
Q  292 cccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacat 391  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||||| |||| | |  |||||| || ||| |||| |||||||| ||||||||||| ||    
T  16908979 cccttcatggacaaggggcagccttggctaccccaaaaaa-atattattcttcatttggttggtatatatttatatccggctacctcaaataataaatat 16908881  T
Q  392 tgagctaccccaaacaaattca 413  Q
    ||||||| ||||||||||||||    
T  16908880 tgagcta-cccaaacaaattca 16908860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 408
Target Start/End: Original strand, 34033839 - 34033942
Alignment:
Q  305 aggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaa 404  Q
    ||||||||||||||||||||||||||| |||||| |||| ||| ||| ||| |  ||| ||||  ||||||||||| |||||||||||  |||||| |||    
T  34033839 aggggtagccttggctaccccaaaaaaaatattattcttgaattagtcggtatgtattgatatctggctaccccaattaataaacatttggctacctcaa 34033938  T
Q  405 acaa 408  Q
    ||||    
T  34033939 acaa 34033942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 416
Target Start/End: Complemental strand, 3498842 - 3498702
Alignment:
Q  276 acaagcaggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctac 375  Q
    |||| ||||||||  ||||||||||  || | ||||||| ||||||||||||||||  ||||| |||| |||| |||||| |   || |||||  |||||    
T  3498842 acaaccaggggcggttcccttcattagcatgaggtagccatggctaccccaaaaaaagtattattcttgaatatgttggtatgtttttatatttagctac 3498743  T
Q  376 cccaaataataaacattgagctaccccaaacaaattcattt 416  Q
    ||||||||| ||| ||| |||||||||||| ||||| ||||    
T  3498742 cccaaataaaaaatatttagctaccccaaataaatttattt 3498702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 22098943 - 22098987
Alignment:
Q  364 atattcggctaccccaaataataaacattgagctaccccaaacaa 408  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  22098943 atattcggctaccccaaataaaaaatattgagctaccccaaacaa 22098987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 7008761 - 7008811
Alignment:
Q  281 caggggcgcatcccttcattgacaaggggtagccttggctaccccaaaaaa 331  Q
    |||||||| |||| |||||||  |||||||||||||||||||| |||||||    
T  7008761 caggggcgtatcctttcattgtgaaggggtagccttggctacctcaaaaaa 7008811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 411
Target Start/End: Original strand, 6917 - 7033
Alignment:
Q  294 cttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattg 393  Q
    |||||| || ||| |||||||||||||||||| |||||||||||| |||| |||   ||||| |||||| |||| |||||| || |||||||||| ||||    
T  6917 cttcatagataagaggtagccttggctacccccaaaaatatattattcttcaattgtttggtataaatttatatccggctaacctaaataataaatattg 7016  T
Q  394 agctaccccaaacaaatt 411  Q
    ||||| ||||||||||||    
T  7017 agcta-cccaaacaaatt 7033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 6516 - 6562
Alignment:
Q  365 tattcggctaccccaaataataaacattgagctaccccaaacaaatt 411  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||||    
T  6516 tattcggctacctcaaataataaatattgagctactccaaacaaatt 6562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 7159 - 7118
Alignment:
Q  372 ctaccccaaataataaacattgagctaccccaaacaaattca 413  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  7159 ctaccccaaataataaacattgagttaccccaaacaagttca 7118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 411
Target Start/End: Original strand, 20141 - 20231
Alignment:
Q  321 accccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctaccccaaacaaatt 411  Q
    ||||||||||||| |||| | || |||  |||||| |||| | | |||  ||||| |||||||||||| |||||||||||||||| |||||    
T  20141 accccaaaaaataaattatttttgaattggttggtataaaattacatttagctactccaaataataaatattgagctaccccaaataaatt 20231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 428611 - 428569
Alignment:
Q  371 gctaccccaaataataaacattgagctaccccaaacaaattca 413  Q
    |||||| |||||||||||||||||||||||| ||| |||||||    
T  428611 gctacctcaaataataaacattgagctaccctaaataaattca 428569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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