View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14371_low_5 (Length: 430)
Name: NF14371_low_5
Description: NF14371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14371_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 34977281 - 34976862
Alignment:
| Q |
18 |
aattggttagtaatgtaatgttgattttgattgtgtctttttgtagttcattatactggaattttgcttgatggaaccaaatttgactcgagccgtgata |
117 |
Q |
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| T |
34977281 |
aattggttagtaatgtaatgttgattttgattgtgtctttttgtagttcattatactggaattttgcttgatggaaccaaatttgactcgagccgtgata |
34977182 |
T |
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| Q |
118 |
ggggtaccactttcaaatttaagcttggtcaaggtaatatttaactttctgttttcctcttgtaaattttgtcgaggtataaaatgatgaatattcaatg |
217 |
Q |
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| T |
34977181 |
ggggtaccactttcaagtttaagcttggtcaaggtaatatttaactttctgttttcctcttgtaaattttgtcgaggtataaaatgatgaatattcaatg |
34977082 |
T |
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| Q |
218 |
tttttaatcatgttgctgtgtatgaggaggaaatgaactatacaatgatagtatcatattaaaatagatcttttatttacacaaatgtgatttttgta-- |
315 |
Q |
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| T |
34977081 |
tttttaatcatgttgctgtgtatgaggaggaaatgaactatacaatgatagtatcatattaaaatagatcttttatttacacaaatgtgatttttgtata |
34976982 |
T |
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| Q |
316 |
---------------tatcgtacaaacactttagattgaagatatgtctgggtgattgatatgtgtgttacaattattttcattgtcagtgttttatcgt |
400 |
Q |
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| T |
34976981 |
ttgtattggttaagttatcgtacagacactttagattgaagatatgtctgggtgattgatatgtgtgttacaattattttcattgtcagtgttttatcgt |
34976882 |
T |
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| Q |
401 |
gtccaacatccgtgtctctg |
420 |
Q |
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| T |
34976881 |
ttccaacatccgtgtctctg |
34976862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 3497367 - 3497274
Alignment:
| Q |
59 |
tgtagttcattatactggaattttgcttgatggaaccaaatttgactcgagccgtgataggggtaccactttcaaatttaagcttggtcaaggt |
152 |
Q |
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| T |
3497367 |
tgtagttcattataccggaacgttgcttgatggtacgaagtttgattctagcagagataggggaactactttcaatttcacgcttggacaaggt |
3497274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 18850620 - 18850563
Alignment:
| Q |
61 |
tagttcattatactggaattttgcttgatggaaccaaatttgactcgagccgtgatag |
118 |
Q |
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| T |
18850620 |
tagttcactacactggaactttgcttgatggaactaaatttgattcaagtcgtgatag |
18850563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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