View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14371_low_6 (Length: 409)
Name: NF14371_low_6
Description: NF14371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14371_low_6 |
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| [»] scaffold1445 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 26372234 - 26372613
Alignment:
| Q |
18 |
gtcaagatgtacgagactagtcgtgcaaagatgataagagttgtttggttttttcgtccttctgaaattcgtaattttcatagaggttacaagccgtgtt |
117 |
Q |
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| T |
26372234 |
gtcaagatgtacgagactagtcgtgcaaagatgataagagttgtttggttttttcgtccttctgaaattcgtaattttcatagaggttataagccttgtt |
26372333 |
T |
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| Q |
118 |
ggaatgagctgttcttggcttctgggaagggaaaaggtcttttcaacgtcaatctgctggtaattttaattcannnnnnnnatttatttgtatcactgac |
217 |
Q |
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| T |
26372334 |
ggaatgagctgttcttggcttctgggaagggaaagggtctttttaacatcaatctgctggtaattttaattca---tttttatctatttgtatcactgac |
26372430 |
T |
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| Q |
218 |
acttctgattgaagacaatacgtgtcagtgtctggcctgacacgccactaacaatgtgattacattctataatttcattttctcaaattagtattggcat |
317 |
Q |
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| T |
26372431 |
acttttgattgaagacaatacgtgtcagtgtctggcctgacacgccactaacaatgtgattacattctataatttcattttctcaaattagtattggcat |
26372530 |
T |
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| Q |
318 |
cggtgtctgtgta------ggtgtttcatatttgatttattgcatcaattttcatgatattaaaatattgtatgcatgactgc |
394 |
Q |
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| T |
26372531 |
cggtgtctgtgtatgtgttggtgtttcatattcgatttattgcatcaattttcatgatattaaaatattgtatgcatgactgc |
26372613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1445 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 1185 - 1325
Alignment:
| Q |
18 |
gtcaagatgtacgagactagtcgtgcaaagatgataagagttgtttggttttttcgtccttctgaaattcgtaattttcatagaggttacaagccgtgtt |
117 |
Q |
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| T |
1185 |
gtcaagatgtttgagaatggtcgtagaaagatgatcagagttgtttggttctttcgtccttcggaaattcagagttttcatcgaagttatcagccgagtt |
1284 |
T |
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| Q |
118 |
ggaatgagctgttcttggcttctgggaagggaaaaggtctt |
158 |
Q |
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| T |
1285 |
ggaatgagttgttcttggcttctgggaaaggcaaaggtctt |
1325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 20120001 - 20119945
Alignment:
| Q |
263 |
cactaaca-atgtgattacattctataatttcattttctcaaattagtattggcatc |
318 |
Q |
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| T |
20120001 |
cactaacacatgtgattacattaaattatttcattttctcaaattattatcggcatc |
20119945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 28524496 - 28524532
Alignment:
| Q |
271 |
atgtgattacattctataatttcattttctcaaatta |
307 |
Q |
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| T |
28524496 |
atgtgattacattctatcatttcattttttcaaatta |
28524532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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