View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14371_low_9 (Length: 364)
Name: NF14371_low_9
Description: NF14371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14371_low_9 |
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| [»] scaffold0181 (1 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 36680060 - 36679902
Alignment:
| Q |
53 |
tcatagcacaactttttgtccaaatacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaacatagatcaataccat |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36680060 |
tcatagcacaactttttgtccaaatacaagttgtctattgtattgaaatgacattttgtccatcaaacatcttataaaacaaaacattgatcaataccat |
36679961 |
T |
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| Q |
153 |
nnnnnnnttcatgtattgttctaccttatgtttgtaatttttagtagtatttacatttaa |
212 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
36679960 |
aaaaaaattcatgtattgttctaccttatg-ttgtaatttttagtagtacttacatttaa |
36679902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 36679878 - 36679798
Alignment:
| Q |
284 |
ttgagtcaaaaataaaatcaaactgctcaaaatcaaactgttccacaagcaccacaaactattatcgcaaaagtccaaggc |
364 |
Q |
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| T |
36679878 |
ttgagtcaaaaataaaatcaaactgctcaaaattaaactattccacaagcaccgcaaactattatcgcaaaagtccaaggc |
36679798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 1231376 - 1231296
Alignment:
| Q |
57 |
agcacaactttttgtccaaa-tacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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| T |
1231376 |
agcacaactttttgtcccacgtacaagttgtctaaaatatcaaaataacattttgtccctcaaaaatcgtataaaacaaaa |
1231296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 36686475 - 36686416
Alignment:
| Q |
236 |
agtatgataatgttttctgaactcgttccacaagcaccgcaaacaattttgagtcaaaaata |
297 |
Q |
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| T |
36686475 |
agtatgataatgttttccgaacccgttccacaagcaaaccaaacaa--ttgagtcaaaaata |
36686416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 2725156 - 2725233
Alignment:
| Q |
59 |
cacaactttttgtccaaatacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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|||||||||||||||| ||||||||||||| || | |||| |||||||||| ||||| ||| |||||||||||| |
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| T |
2725156 |
cacaactttttgtccacgtacaagttgtctaaaataccaaaatagcattttgtccctcaaaaatcgtataaaacaaaa |
2725233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 20255107 - 20255028
Alignment:
| Q |
57 |
agcacaactttttgtccaaatacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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| T |
20255107 |
agcacaacttcttgtcccactacaagttgtctaaaataccaaaataacattttgtccctcaaaaatcttataaaacaaaa |
20255028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 41459651 - 41459571
Alignment:
| Q |
57 |
agcacaactttttgt-ccaaatacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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| T |
41459651 |
agcacaactttttgttccacgtacaagttgtctaaaatatcaaaataacattttgtccctcaaaaatcgtataaaacaaaa |
41459571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 40489404 - 40489319
Alignment:
| Q |
52 |
atcatagcacaactttttgtccaa-atacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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|||| ||||||||||||||||| | |||||||||||||| || | |||| ||||||||||| ||||| || |||||||||||| |
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| T |
40489404 |
atcacagcacaactttttgtcccacatacaagttgtctaaaataccaaaataacattttgtccctcaaaaattgtataaaacaaaa |
40489319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 38663203 - 38663123
Alignment:
| Q |
57 |
agcacaactttttgtccaaa-tacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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| T |
38663203 |
agcacaactttttgtcccacgtacaagttgtctaaaatatcaaaataacattttgtccctcaaaaatcgtataaaacaaaa |
38663123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 46154971 - 46154891
Alignment:
| Q |
57 |
agcacaactttttgtccaaat-acaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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||||||||||||||||| | | |||||||||||| || | |||| ||||||||||| ||||| |||||||||||||||| |
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| T |
46154971 |
agcacaactttttgtcccacttacaagttgtctaaaataccaaaataacattttgtccttcaaaaatcttataaaacaaaa |
46154891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 32270424 - 32270344
Alignment:
| Q |
57 |
agcacaactttttgtccaaa-tacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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||||||||||||||||| | ||||||||||||| |||| |||| |||||||||| ||||| ||| |||||||||||| |
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| T |
32270424 |
agcacaactttttgtcccatgtacaagttgtctaaaatatcaaaatagcattttgtccctcaaaaatcatataaaacaaaa |
32270344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 19119 - 19204
Alignment:
| Q |
52 |
atcatagcacaactttttgtccaaa-tacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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|||| ||||||||||||||||| | ||||||||||||| || | |||| ||||||||||| ||||| ||| |||||||||||| |
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| T |
19119 |
atcacagcacaactttttgtcccacgtacaagttgtctaaaataccaaaataacattttgtccttcaaaaatcgtataaaacaaaa |
19204 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 51501 - 51421
Alignment:
| Q |
57 |
agcacaactttttgtccaaa-tacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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||||||||||||||||| | ||||||||||||| |||| |||| |||||||||| ||||| ||| |||||||||||| |
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| T |
51501 |
agcacaactttttgtcccacgtacaagttgtctaaaatatcaaaatagcattttgtccctcaaaaatcgtataaaacaaaa |
51421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 18685898 - 18685818
Alignment:
| Q |
57 |
agcacaactttttgtccaaa-tacaagttgtctattgtatcgaaatgacattttgtccatcaaacatcttataaaacaaaa |
136 |
Q |
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||||||||||||||||| | ||||||||||||| ||| |||| ||||||||||| ||||| ||| |||||||||||| |
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| T |
18685898 |
agcacaactttttgtcccacgtacaagttgtctaaaatattaaaataacattttgtccctcaaaaatcctataaaacaaaa |
18685818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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