View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14372_high_13 (Length: 228)
Name: NF14372_high_13
Description: NF14372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14372_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 45229827 - 45229965
Alignment:
| Q |
15 |
cataggtcatactgattatgaaatacctgctgaacatttttcatcacaagtttcccaatcacctttattatacctgttgcataaatcaaacataagtagc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45229827 |
cataggtcatactgattatgaaatacctgctgaacatttttcatcacaagtttcccaatcacctttattatacctgttgcataaatcaaacataagtagt |
45229926 |
T |
|
| Q |
115 |
aatttccataaaactgagatactgtcattactacacatt |
153 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45229927 |
aatatccataaaactgagatactgtcattactatacatt |
45229965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 45245747 - 45245935
Alignment:
| Q |
15 |
cataggtcatactgattatgaaatacctgctgaacatttttcatcacaagtttcccaatcacctttattatacctgttgcataaatcaaacataagtagc |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45245747 |
cataggtcatactgattatgacatacctgctgaacatttttcatcacaagtttcccaatcacctgtattatacctgttgcataaatcaaacataagtagc |
45245846 |
T |
|
| Q |
115 |
aatttccataaaactgagatactgtcatta-ctacacatttgaaaacaaactcattttacggacactagagtgctagtgttgtagagtgc |
203 |
Q |
| |
|
||| || |||||||| || ||||||||||| || | ||| |||||||||| ||||||| |||||||| || |||| ||||||||||||| |
|
|
| T |
45245847 |
aatatctataaaactcagctactgtcattatgtagatattagaaaacaaacacattttatggacacta-agcgctaatgttgtagagtgc |
45245935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 45209560 - 45209650
Alignment:
| Q |
17 |
taggtcatactgattatgaaatacctgctgaacatttttcatcacaagtttcccaatcacctttattatacctgttgcataaatcaaacat |
107 |
Q |
| |
|
||||||||| ||||| ||| ||||||| |||| ||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
45209560 |
taggtcataatgattttgacatacctgtggaacgtttttcatcacaagtttgccaaccacatttactatacctgttgcataaatcaaacat |
45209650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 45230771 - 45230821
Alignment:
| Q |
155 |
gaaaacaaactcattttacggacactagagtgctagtgttgtagagtgccg |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45230771 |
gaaaacaaactcattttacggacactggagtgctagtgttgtagagtgccg |
45230821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 45204083 - 45204135
Alignment:
| Q |
38 |
tacctgctgaacatttttcatcacaagtttcccaatcacctttattatacctg |
90 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||| ||||||| ||||| |
|
|
| T |
45204083 |
tacctgctggacatttttcatcacaagtctcccaaccacatttattagacctg |
45204135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University