View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14372_high_3 (Length: 467)
Name: NF14372_high_3
Description: NF14372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14372_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 52878974 - 52878733
Alignment:
| Q |
15 |
atcatcatgctcatgcaagaatatcaatccaaacgacaacaagctagcaagttcaaaaataattaaatatctttccaacttgtt---aaatatatgtgat |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
52878974 |
atcatcatgcttatgcaagaatatcaatccaaacgacaacaagctagcaagttcaaaaataattaaatatatttccaacttgttgttaaatatatgtgat |
52878875 |
T |
|
| Q |
112 |
ccatgttgatcacaaacaaataactaaataactaaaaaattgtaacgaggaagaaaattgtgttagagatccgagaatacaagcaaatagaaggggaagt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52878874 |
ccatgttgatcacaaacaaataactaaataactaaaaaattgtaacgaggaagaaaattgtgttagagatccgagaatacaagcaaatagaaggggaagt |
52878775 |
T |
|
| Q |
212 |
agaccgagaccaaataactaaaaaatggaagcaatggatgtg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52878774 |
agaccgagaccaaataactaaaaaatggaagcaatggatgtg |
52878733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 280 - 457
Target Start/End: Complemental strand, 10251830 - 10251651
Alignment:
| Q |
280 |
atagatactttctataaagatttcagcgtagaataatattttgcatggttttaatataatttttagaatacttgacattattttgaaaaagaagaaacaa |
379 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10251830 |
atagatattttctataaagatttcagcgtaaaataatattttgcatggttttaatataatttttagaatacttgacattattttgaaaaagaagaaacaa |
10251731 |
T |
|
| Q |
380 |
aaca--attaaaagttagcataggaataaattagaggcaatagaacatcgccaaacgaaacatgaccaaccaaacctatg |
457 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10251730 |
aacaagattaaaagttagcataggaataaattagaggcaatagaacatcgccaaacgaaacatgaccaaccaaacctatg |
10251651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University