View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14372_high_6 (Length: 347)
Name: NF14372_high_6
Description: NF14372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14372_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 36136287 - 36136604
Alignment:
| Q |
13 |
aatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatacttctgtatcagcaaatcttctcctatatacagtgaatctc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36136287 |
aatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatacttctgtatcagcaaatcttctcctatatacagtgaatctc |
36136386 |
T |
|
| Q |
113 |
caactcaacattacaatacttctgtctcaaaatgagaaagtggaccgacctattcttgttgcttctgtattcaattttctagggaaaggttttccagctg |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36136387 |
caactcaacattacaatacttctgtctcaaa--gagaaagtggaccgacctattcttgttgtttctgtattcaattttctagggaaaggttttccagctg |
36136484 |
T |
|
| Q |
213 |
tggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccagtgtgccatatgacattgattcaattatatttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36136485 |
tggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccagtgtgccatatgacattgattcagttatatttg |
36136584 |
T |
|
| Q |
313 |
taactaattatttttcttta |
332 |
Q |
| |
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||||||| |||||||||||| |
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| T |
36136585 |
taactaactatttttcttta |
36136604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 41339373 - 41339449
Alignment:
| Q |
193 |
agggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttc |
269 |
Q |
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| T |
41339373 |
agggaaaggttttccagccgtggtcgaaatcattgcagatggaaaaatgagcaaccaggtatctaaatggttatttc |
41339449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 41337803 - 41337843
Alignment:
| Q |
13 |
aatatatcagtggatccaaactattgcaaattttagatgcc |
53 |
Q |
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||||||||||||||||||||| |||||||||||| |||||| |
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| T |
41337803 |
aatatatcagtggatccaaacaattgcaaattttggatgcc |
41337843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 319
Target Start/End: Original strand, 22629871 - 22629990
Alignment:
| Q |
197 |
aaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccagtgtgccatatgacatt |
296 |
Q |
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|||||||||||||| ||||| ||||||||||||| | |||| || |||| |||||||||||| | |||||||||||||| |||| ||||||||||| |
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| T |
22629871 |
aaaggttttccagccttggtcgaaatcattacagaag---aaattagaaaccgtgtatctatatggctctttctttgtggccaatgtgtcatatgacatt |
22629967 |
T |
|
| Q |
297 |
gattcaattatatttgtaactaa |
319 |
Q |
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|||||| ||| |||||||||||| |
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| T |
22629968 |
gattcagttagatttgtaactaa |
22629990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 22630255 - 22630137
Alignment:
| Q |
198 |
aaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccagtgtgccatatgacattg |
297 |
Q |
| |
|
||||||||||||| ||||| ||||||||| ||| |||||||| | ||| |||||||||||| | ||||| ||||| |||| || |||||||||||| |
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| T |
22630255 |
aaggttttccagccatggtcgaaatcattagagat---aaaatgagaagccatgtatctatatggctctttctctgtggtcagtttgtcatatgacattg |
22630159 |
T |
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| Q |
298 |
attcaattatatttgtaactaa |
319 |
Q |
| |
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| ||| ||| |||||||||||| |
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| T |
22630158 |
aatcatttagatttgtaactaa |
22630137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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