View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14372_low_1 (Length: 683)
Name: NF14372_low_1
Description: NF14372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14372_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 625; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1 - 673
Target Start/End: Complemental strand, 41842418 - 41841746
Alignment:
| Q |
1 |
cataaaggaaggtgagaaagtaaagaaacttacggagattgatttgctttaactttatgttgaaacagcctaacagagtagaaaaaagttgatttcaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
41842418 |
cataaaggaaggtgagaaagtaaagaaacttgcggagattgatttcctttaactttatgttgaaacagcctaacaaaatagaaaaaagttgatttcaata |
41842319 |
T |
|
| Q |
101 |
gcaccatttcatcctcaacaagatttcttgaattattgttagttgttcacctttttgttaggtgtgacattgttcactgttttagaaacttattttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41842318 |
gcaccatttcatcctcaacaagatttcttgagttattgttagttgttcacctttttgttaggtgtgacattgttcactgttttagaaacttattttgtct |
41842219 |
T |
|
| Q |
201 |
ggttactgtgcatatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggggattgattccgagaaagactattcgggaaagtttgctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41842218 |
ggttactgtgcatatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggggattgattccgagaaagactattcgggaaagtttgctat |
41842119 |
T |
|
| Q |
301 |
gggatcgagtgtgattctttcacatcttcttcttagagaagagaattactatgaagattatttagctaaaatgagaggaactcaaagtgaaaggatgaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41842118 |
gggatcgagtgtgattctttcacatcttcttcttagagaagagaattactatgaagattatttagctaaaatgagaggaactcaaagtgaaaggatgaag |
41842019 |
T |
|
| Q |
401 |
atcttataccattcctcatttcctccttatggctccagtagcttcgtatcggcagattctatggggtggaattccatggtttatgtatgtaatgtaatca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41842018 |
atcttataccattcctcatttcctccttatggctccagtagcttcgtatcggcagattctatggggtggaattccaacgtttatgtatgtaatgtaatca |
41841919 |
T |
|
| Q |
501 |
aaaactaaaacaagcacacggtcagaatggaatgaagtattatgcattgctgtaactgtatatgtatcatacatatatatgcataacattttgtaggatt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
41841918 |
aaaactaaaacaagcacacggtcagaatgaaatgaagtattatgcattgctgtaactgtatatgtatcatacatacatatacataacattttgtaggatt |
41841819 |
T |
|
| Q |
601 |
tcagggaaagttggttttagtttatgctaactgtatatgtattgccgtctacatgcacgctttttagcctatg |
673 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41841818 |
tcagggaaagttgattttagtttatgctaactgtatatgtattgccgtctacatgcacactttttagcctatg |
41841746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 56 - 409
Target Start/End: Original strand, 42090105 - 42090453
Alignment:
| Q |
56 |
tatgttgaaacagcctaacagagtagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgaattattgttagttgttcacctttt |
155 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||| | ||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| |
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| T |
42090105 |
tatgttgaaacagcccaacagaatagaaaa-agttgattcccatatcaccatttcatcctcaacaagttttcttgggttattattagttgttcacctttt |
42090203 |
T |
|
| Q |
156 |
tgttaggtgtgacattgttcactgttttagaaacttattttgtctggttactgtg--catatgtcggattttgcaccatgaaaatggtgctacattgcac |
253 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||||| || ||| ||||||||| ||||||| ||||| |||||||||||| |||||||||||| |
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| T |
42090204 |
tgttaggtgtgacgttgctgactgttttagaaacttgcttcatcttgttactgtgaacatatgttagatttgacaccatgaaaattgtgctacattgcga |
42090303 |
T |
|
| Q |
254 |
agaatggggattgattccgagaaagactattcgggaaagtttgctatgggatcgagtgtgattctttcacatcttcttcttagagaagagaattactatg |
353 |
Q |
| |
|
| | | |||||||||||||||||||| |||||||||||||||||||| | | |||||||||| ||| || |||||||| |||||||||||| || |
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| T |
42090304 |
acagtagggattgattccgagaaagagtattcgggaaagtttgctatagactgcagtgtgattcattc---gctggttcttagaaaagagaattactgtg |
42090400 |
T |
|
| Q |
354 |
aagattatttagctaaaatgagaggaactcaaagtgaaaggatgaagatcttatac |
409 |
Q |
| |
|
| |||||||||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
42090401 |
ca---tatttagctaaaataggaggtactcaaagtgaaaggatgaagatcttatac |
42090453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 605 - 646
Target Start/End: Complemental strand, 41841549 - 41841508
Alignment:
| Q |
605 |
ggaaagttggttttagtttatgctaactgtatatgtattgcc |
646 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41841549 |
ggaaagttgattttagtttatgctaactgtatatgtattgcc |
41841508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 4e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 11653170 - 11652980
Alignment:
| Q |
1 |
cataaaggaaggtgagaaagtaaagaaacttacggagattgatttgctttaactttatgttgaaacagcctaacagagtagaaaaaagttgatttcaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
11653170 |
cataaaggaaggtgagaaagtaaagaaacttgcggagattgatttcctttaactttacgttgaaacagcctaacagaatagaaaaaagttgatttcaata |
11653071 |
T |
|
| Q |
101 |
gcaccatttcatcctcaacaagatttcttgaattattgttagttgttcacctttttgttaggtgtgacattgttcactgttttagaaactt |
191 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11653070 |
gcaccgtttcatcctcaacaagatttcttgagttattgttagttgttcacctttttgttaggtgtgacattgttcactgttttagaaactt |
11652980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 673
Target Start/End: Complemental strand, 3461833 - 3461784
Alignment:
| Q |
624 |
atgctaactgtatatgtattgccgtctacatgcacgctttttagcctatg |
673 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||| |||||||||||||| |
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|
| T |
3461833 |
atgcaaactgtatatgtattgctgtctacatacacactttttagcctatg |
3461784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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